PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00143836001

Common Name

GSBRNA2T00143836001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 319aa MW: 37540.2 Da PI: 6.8322

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00143836001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	73.4	3.8e-23	46	129	1	84
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpyfdq 84 +W++ +v+++i+ ++++e+ + ++k++W+ vs++m erg+++sp+qC++k+++lnkrykk++e+ +++t ++++++ +++d+ GSBRNA2T00143836001 46 KWMDTMVKLMITTLSYLDEDDHKH-ARKGKWRTVSEVMDERGYHVSPQQCEDKFNDLNKRYKKLNEMLGRGTcCDVVENPALLDK 129 7****************98776.899*****************************************85777777777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	6.4E-20	44	157	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MRDLGPNVMD NLPVTEYNNG HRWTSQEEDG DGHNKSKNSS PWGRVKWMDT MVKLMITTLS 60 YLDEDDHKHA RKGKWRTVSE VMDERGYHVS PQQCEDKFND LNKRYKKLNE MLGRGTCCDV 120 VENPALLDKI GYLDEKEKDE VRKIMSSKHL FYEEMCSYHN GNRLNLPHDP ALQRSLRIRC 180 SDDDGHGKHQ NEDLVDCEEH NMSQKDCGDR GVSLGGALKR LRRSQNHEDL SHPNHVNEGY 240 VPHLHKQWTE SKSLELEERK LQIQAELMEL ERQRIKWERF SQKRDQKLQI MRMENENMKL 300 ENEKMKLELR GVELGARF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00143836001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189339	0.0	AC189339.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB041J04, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013588299.1	0.0	PREDICTED: uncharacterized protein LOC106296657
TrEMBL	A0A0D3CWA5	0.0	A0A0D3CWA5_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6H3T8	0.0	A0A3P6H3T8_BRAOL; Uncharacterized protein
STRING	Bo6g083700.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5042	27	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76870.1	1e-110

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]