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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GSBRNA2T00143151001 |
Common Name | GSBRNA2T00143151001 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family |
AP2 |
Protein Properties |
Length: 570aa MW: 62416 Da PI: 6.4278 |
Description |
AP2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GSBRNA2T00143151001 | genome | Genoscope | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 47.8 | 3.7e-15 | 209 | 268 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55
s y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g
GSBRNA2T00143151001 209 SIYRGVTRHRWTGRYEAHLWDnSCKrEGqaRKgRQVYLGGYDKEEKAARAYDLAALKYWG 268
57*******************999975578446*************************98 PP
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2 | AP2 | 51.2 | 3.2e-16 | 311 | 362 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s y+GV+++++ grW A+I + +k +lg+fgt eeAa+a++ a+ k++g
GSBRNA2T00143151001 311 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 362
57****************988532...5************************998 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 570 aa
Download sequence Send
to blast |
MNNNWLGFSL SPSDQNIHRT GVVDSSTATT AVDVTGEYCY DMTAASDESS AVRTSFPSPF 60 GVVLDAFTRD NNSHSRDWDI NGGACNNIHS NDQNEPKLEN FFGRTTTIYN NSENGGDGNG 120 GCGGGDGAGG SLGLSMIKTW LTNQPVSNVD HQENNGNAAR GLSLSMNSST TCDSNKYNNR 180 NNVVQEKTNV DSVDATPKKT IESFGQRTSI YRGVTRHRWT GRYEAHLWDN SCKREGQARK 240 GRQVYLGGYD KEEKAARAYD LAALKYWGTT TTTNFPITEY EKEVEDMNHM TRQEYVASLR 300 RKSSGFSRGA SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFGTQEEAA EAYDIAAIKF 360 RGLTAVTNFE MSRYNVKAIL DSPSLPIGSS AKRLKEVNHP VPSMMINNNV SESENDASGW 420 QNAAVQHHHG IDLSLLQQHQ ERYNNYYNGG SARAYFKEEE DQHHFLSNSP SLMANIDQHS 480 SASGDMVTVY GNVGGYGGHQ GLAIPVGTSL NCDTLAAAEI AYDARNHYYF AQQQQGGGFP 540 VGISNNVGSN MYFNGEGGGE GAFTVWNNT*
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Expressed in embryo throughout embryogenesis. Also present in free nuclear endosperm, but disappears once endosperm cellularization begins. {ECO:0000269|PubMed:12172019}. |
Uniprot | TISSUE SPECIFICITY: Mostly expressed in developing seeds. {ECO:0000269|PubMed:12172019}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AF317904 | 0.0 | AF317904.1 Brassica napus AP2/EREBP transcription factor BABY BOOM1 (BBM1) mRNA, complete cds. |