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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00142985001 | ||||||||
Common Name | GSBRNA2T00142985001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | CO-like | ||||||||
Protein Properties | Length: 360aa MW: 39586 Da PI: 6.3396 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 25.6 | 2.5e-08 | 46 | 86 | 4 | 39 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.....Htv 39 +C++++ ++++ C+d ++ lC++C +H+g H+ GSBRNA2T00142985001 46 LICERCNAQPASVRCTDERVSLCQNCDWLGHNGatnshHKK 86 68*****************************9899997765 PP | |||||||
2 | CCT | 56.5 | 9.9e-20 | 302 | 345 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++a+ RYkeK+k RkF+K++rY sRK++A+ R RvKGrFvk+ GSBRNA2T00142985001 302 RNNAVIRYKEKKKARKFDKRVRYVSRKERADVRRRVKGRFVKSG 345 999**************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 8.887 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.42E-6 | 4 | 47 | No hit | No description |
SMART | SM00336 | 4.4E-7 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.3 | 43 | 89 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.0E-5 | 46 | 86 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.27E-5 | 47 | 76 | No hit | No description |
SMART | SM00336 | 3.5 | 48 | 88 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 14.951 | 302 | 344 | IPR010402 | CCT domain |
Pfam | PF06203 | 9.8E-15 | 302 | 344 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MGYMCDFCGE QRSMVHCRSD AACLCLSCDR NVHSANALSK RHSRTLICER CNAQPASVRC 60 TDERVSLCQN CDWLGHNGAT NSHHKKQTIN CYSGCPSSEE LASIWSFCLD LDLDFSKGGQ 120 SACEQGMGLM TIDEGTGEKR SGGHDANVDQ PGTSSAAQEK STLAKGLGVS EDDFCGNLIM 180 DEMDLAFEKY DELFGTAYNS SKDLFEHGGI ESLFEKHEGK TMQQPAESNA ASGDSFMTCR 240 TEPIICFTSQ PAHSNISFSG ATGEGNNAGD FQDCGVSSMQ QLSKETPLWC PPTAQEISAT 300 TRNNAVIRYK EKKKARKFDK RVRYVSRKER ADVRRRVKGR FVKSGEAYDY DPLSPTRSY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00142985001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013598992.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 10 | ||||
Swissprot | Q9LUA9 | 0.0 | COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10 | ||||
TrEMBL | A0A0D3DBR0 | 0.0 | A0A0D3DBR0_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6F637 | 0.0 | A0A3P6F637_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g089140.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1682 | 27 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48250.1 | 0.0 | B-box type zinc finger protein with CCT domain |
Publications ? help Back to Top | |||
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