PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00142926001

Common Name

GSBRNA2T00142926001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 111aa MW: 12718.4 Da PI: 10.4352

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00142926001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	35.8	1.7e-11	89	110	2	23
--SS-EEEEEEE--TT-SS-EE CS WRKY 2 dDgynWrKYGqKevkgsefprs 23 +D ++WrKYGqK++kgs++prs GSBRNA2T00142926001 89 SDAWAWRKYGQKPIKGSPYPRS 110 7********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.1E-11	74	110	IPR003657	WRKY domain
SuperFamily	SSF118290	1.2E-8	83	110	IPR003657	WRKY domain
PROSITE profile	PS50811	14.906	83	110	IPR003657	WRKY domain
Pfam	PF03106	9.4E-7	90	110	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 111 aa Download sequence Send to blast
METTGLDELG ELYKPFYSFS TQIILTSSVS VPEDSRIFRD DKKQRTHGCL QSNGSRVDHV 60 RITKSKSKKS KKNQQKRVVE QVKEENLLSD AWAWRKYGQK PIKGSPYPRS *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the expression of defense genes in innate immune response of plants. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates WRKY 22, SIRK and its own promoters. {ECO:0000269\|PubMed:11875555}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00142926001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced 30 minutes after flagellin treatment. {ECO:0000269\|PubMed:11875555}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC246576	1e-152	KC246576.1 Brassica napus WRKY transcription factor 29.2 (WRKY29.2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013596755.1	2e-75	PREDICTED: LOW QUALITY PROTEIN: probable WRKY transcription factor 29
Refseq	XP_022561233.1	6e-77	probable WRKY transcription factor 29
Swissprot	Q9SUS1	5e-63	WRK29_ARATH; Probable WRKY transcription factor 29
TrEMBL	A0A0D3DBK3	4e-73	A0A0D3DBK3_BRAOL; Uncharacterized protein
STRING	Bo7g088570.1	7e-74	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6090	25	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G23550.1	3e-64	WRKY family protein

Publications ? help Back to Top
Zhou F, et al. High humidity suppresses ssi4-mediated cell death and disease resistance upstream of MAP kinase activation, H2O2 production and defense gene expression. Plant J., 2004. 39(6): p. 920-32 [PMID:15341634] Liu XQ, et al. OsWRKY03, a rice transcriptional activator that functions in defense signaling pathway upstream of OsNPR1. Cell Res., 2005. 15(8): p. 593-603 [PMID:16117849] Singh V,Roy S,Singh D,Nandi AK Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes. J. Biosci., 2014. 39(1): p. 119-26 [PMID:24499796] Yi SY,Shirasu K,Moon JS,Lee SG,Kwon SY The activated SA and JA signaling pathways have an influence on flg22-triggered oxidative burst and callose deposition. PLoS ONE, 2014. 9(2): p. e88951 [PMID:24586453] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Cambiagno DA,Lonez C,Ruysschaert JM,Alvarez ME The synthetic cationic lipid diC14 activates a sector of the Arabidopsis defence network requiring endogenous signalling components. Mol. Plant Pathol., 2015. 16(9): p. 963-72 [PMID:25727690] Gkizi D, et al. The Innate Immune Signaling System as a Regulator of Disease Resistance and Induced Systemic Resistance Activity Against Verticillium dahliae. Mol. Plant Microbe Interact., 2016. 29(4): p. 313-23 [PMID:26780421] Li Y,Williams B,Dickman M Arabidopsis B-cell lymphoma2 (Bcl-2)-associated athanogene 7 (BAG7)-mediated heat tolerance requires translocation, sumoylation and binding to WRKY29. New Phytol., 2017. 214(2): p. 695-705 [PMID:28032645] Wang S, et al. Bacillus cereus AR156 Activates Defense Responses to Pseudomonas syringae pv. tomato in Arabidopsis thaliana Similarly to flg22. Mol. Plant Microbe Interact., 2018. 31(3): p. 311-322 [PMID:29090631]