PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00142487001 | ||||||||
Common Name | GSBRNA2T00142487001, LOC106360566 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 537aa MW: 60317.2 Da PI: 8.9787 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 44.3 | 3.3e-14 | 23 | 101 | 12 | 97 |
HTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 12 ksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ++ l +p f+++h g +k+ kt +l++ s ++W vk+ ++ + +t+GW++F+ a++L+ gD+++F+++g++ f +v++f GSBRNA2T00142487001 23 HTH-LNIPVAFFSKHvqGRNKHI-KTAKLRTdASAKTWLVKI--NGLR----FTDGWEDFAVAHELRIGDIIIFRHEGEMVF--HVTAF 101 444.99**********7555544.68888875888*******..5555....9**********************9998888..88776 PP | |||||||
2 | B3 | 69.7 | 3.8e-22 | 160 | 253 | 5 | 99 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 +++++l+ +rl++pk fa+++g+++ ++k+++l +e+grsW+++++y+ ++ +++ + GW++F+ +ng+++g ++F+l++ +++ +v+ GSBRNA2T00142487001 160 HVSPSSLSCDRLYVPKGFAKSNGLDNMSGKEIVLLNEEGRSWNLNITYNESGMHTFVRPGWRSFCAENGMNQGHHCTFELVR-KSAPPVL 248 5678899999*********************************************************************998.8888888 PP EEE-S CS B3 95 kvfrk 99 ++ r+ GSBRNA2T00142487001 249 RLSRA 253 88775 PP | |||||||
3 | B3 | 64.3 | 1.9e-20 | 274 | 363 | 6 | 97 |
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ++s++l+++ l+l kf++++g+kk s +++l++e+g +W+v l++ +s+r++l+ GWk F++ ng+k+ D+++Fkl++ ++ ++v+ GSBRNA2T00142487001 274 VSSNSLRTDKLYLQMKFVAANGLKKGFS-EIILKNEWGGRWSVGLRHYASSNRTYLGPGWKTFCQVNGIKAEDSFMFKLVE-TGDKPVLL 361 57899999****************9887.*************************************************998.55567777 PP EE CS B3 96 vf 97 ++ GSBRNA2T00142487001 362 LC 363 76 PP | |||||||
4 | B3 | 50.5 | 3.6e-16 | 440 | 534 | 3 | 98 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 +++ ++lk++ lp f++ +g++k +++++l ++g ++W v l +k+ g++ ++kGW+e ++a+g+k+g++++++l++++e+ GSBRNA2T00142487001 440 RLTLTQNALKTSVKHLPLGFTRVNGINK--PRKIMLLGKDGvKKWVVDLLKNKSTGTMRIRKGWRELCDAHGVKVGESFLLELIWDEEAI 527 556678888999999*********9996..558****************99999999*****************************9999 PP .EEEEE- CS B3 92 lvvkvfr 98 +v+k++ GSBRNA2T00142487001 528 PVLKFCT 534 9999985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.8E-22 | 8 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.83E-20 | 9 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.617 | 11 | 104 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.48E-15 | 12 | 101 | No hit | No description |
SMART | SM01019 | 1.1E-21 | 14 | 104 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.2E-9 | 25 | 98 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.0E-22 | 149 | 250 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.12E-20 | 150 | 250 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 14.931 | 156 | 254 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.51E-17 | 156 | 243 | No hit | No description |
SMART | SM01019 | 2.1E-28 | 157 | 254 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.4E-20 | 160 | 253 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.1E-17 | 266 | 365 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 14.17 | 269 | 365 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.2E-20 | 270 | 366 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 4.51E-17 | 273 | 366 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 3.6E-19 | 274 | 364 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.82E-15 | 275 | 363 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.4E-15 | 434 | 534 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.71E-16 | 434 | 533 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.02E-13 | 436 | 533 | No hit | No description |
PROSITE profile | PS50863 | 12.52 | 438 | 535 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.6E-15 | 438 | 534 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.6E-20 | 438 | 536 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 537 aa Download sequence Send to blast |
MAHQSLHSPT NPHFFQPLLP GFHTHLNIPV AFFSKHVQGR NKHIKTAKLR TDASAKTWLV 60 KINGLRFTDG WEDFAVAHEL RIGDIIIFRH EGEMVFHVTA FGPSCCDIQY TSASSHNIID 120 DSQDQANNTG NSSGEKRKRV KKNPRTKEES SSDHSHFVAH VSPSSLSCDR LYVPKGFAKS 180 NGLDNMSGKE IVLLNEEGRS WNLNITYNES GMHTFVRPGW RSFCAENGMN QGHHCTFELV 240 RKSAPPVLRL SRAEHDPKPA PESSLHHSYY VGSVSSNSLR TDKLYLQMKF VAANGLKKGF 300 SEIILKNEWG GRWSVGLRHY ASSNRTYLGP GWKTFCQVNG IKAEDSFMFK LVETGDKPVL 360 LLCTSNRGKT PLECSEDSDD VNSLSSDTSS GDDSGEESQE SEEESLEDDS SSKDCVEMEK 420 RKRSLRCKYP SSYSKHRFVR LTLTQNALKT SVKHLPLGFT RVNGINKPRK IMLLGKDGVK 480 KWVVDLLKNK STGTMRIRKG WRELCDAHGV KVGESFLLEL IWDEEAIPVL KFCTKL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00142487001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013638638.1 | 0.0 | PREDICTED: B3 domain-containing protein REM17-like isoform X2 | ||||
Swissprot | Q84WP3 | 1e-155 | REM17_ARATH; B3 domain-containing protein REM17 | ||||
TrEMBL | A0A3N6UF90 | 0.0 | A0A3N6UF90_BRACR; Uncharacterized protein | ||||
STRING | Bo5g044970.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5781 | 16 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26680.1 | 1e-152 | B3 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 106360566 |
Publications ? help Back to Top | |||
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