PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00142279001
Common NameGSBRNA2T00142279001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family SBP
Protein Properties Length: 368aa    MW: 40812.3 Da    PI: 8.5461
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00142279001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP125.12.9e-39152229178
                          --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                  SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                          +Cqv+gCe dls+ak+yhr+h+vCe hsk+p+v+v gle+rfCqqCsr h++sefDe+krsCr+rL++hn+rrrk+q 
  GSBRNA2T00142279001 152 RCQVDGCELDLSSAKDYHRKHRVCENHSKCPKVTVGGLERRFCQQCSRLHAVSEFDEKKRSCRKRLSHHNARRRKPQR 229
                          6**************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.3E-33145214IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.864150227IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.66E-36151231IPR004333Transcription factor, SBP-box
PfamPF031101.4E-30153226IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MDCNMTSPLW DWDHFLMSNP SKTEDDKRQP STEWGIEKGE GIESIFPSFE RVSSGSTTGF  60
STNSSSPIFR HAKLASESSP GDSCSNIDFV QVKTSTAESD LCLKLGKQTY CEDVWGRSNN  120
EVSAVSLKLL APSVVARKKS KPYGQSSMQV PRCQVDGCEL DLSSAKDYHR KHRVCENHSK  180
CPKVTVGGLE RRFCQQCSRL HAVSEFDEKK RSCRKRLSHH NARRRKPQRD CNGRQHPNML  240
WNGLSLNTSP VEKYIWSPSY DTKPTQMESG FTLSFQRGRG PEEHLYAGSS RSFSTFQTSG  300
GFSAGRSNSQ LPGKAGVGEY SGGLHESQDI YSVLSLLSTS SDSHGTKHNP TVEPQPTTHG  360
TFPTHFI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-251532261184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1208225KKRSCRKRLSHHNARRRK
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed constitutively during plant development, weak increase during flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:14573523}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00142279001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896490.0AC189649.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS010I09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013697207.10.0squamosa promoter-binding-like protein 10 isoform X1
RefseqXP_022558988.10.0squamosa promoter-binding-like protein 10 isoform X1
SwissprotQ8S9L01e-176SPL10_ARATH; Squamosa promoter-binding-like protein 10
TrEMBLA0A3P6FLM20.0A0A3P6FLM2_BRAOL; Uncharacterized protein
STRINGBo5g051980.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50041653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27370.41e-153squamosa promoter binding protein-like 10
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Yu N,Niu QW,Ng KH,Chua NH
    The role of miR156/SPLs modules in Arabidopsis lateral root development.
    Plant J., 2015. 83(4): p. 673-85
    [PMID:26096676]
  4. Xu M, et al.
    Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana.
    PLoS Genet., 2016. 12(8): p. e1006263
    [PMID:27541584]
  5. Gao R,Wang Y,Gruber MY,Hannoufa A
    miR156/SPL10 Modulates Lateral Root Development, Branching and Leaf Morphology in Arabidopsis by Silencing AGAMOUS-LIKE 79.
    Front Plant Sci, 2017. 8: p. 2226
    [PMID:29354153]
  6. Dotto M,Gómez MS,Soto MS,Casati P
    UV-B radiation delays flowering time through changes in the PRC2 complex activity and miR156 levels in Arabidopsis thaliana.
    Plant Cell Environ., 2018. 41(6): p. 1394-1406
    [PMID:29447428]