PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00142194001 | ||||||||
Common Name | GSBRNA2T00142194001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | SBP | ||||||||
Protein Properties | Length: 342aa MW: 37348.3 Da PI: 8.1687 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 131.3 | 3.4e-41 | 103 | 180 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +C v+gC++d+s+++eyh+rhkvC+vhsk+pvv+++g +qrfCqqCsrfh l+efDe+k+sCr+rL++hn+rrrk+q+ GSBRNA2T00142194001 103 ICLVDGCDSDFSNCREYHKRHKVCDVHSKTPVVTINGNNQRFCQQCSRFHGLEEFDEGKKSCRKRLDGHNRRRRKPQP 180 5**************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 6.6E-32 | 96 | 165 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.505 | 101 | 178 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.22E-38 | 102 | 183 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 5.0E-30 | 104 | 177 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MDWNFKLSSG YFSEFDQESV PDLTPVDASI SFGGSSSPPR RLQPKGDLPF DLKLGRNIGH 60 SSSSSSSAFG KTEKVISLSK LKESASEASR SSKRTRGNNQ IPICLVDGCD SDFSNCREYH 120 KRHKVCDVHS KTPVVTINGN NQRFCQQCSR FHGLEEFDEG KKSCRKRLDG HNRRRRKPQP 180 DHTDRTATFF QGSKLLDFSS SPHVFPTTSV VSPSWGSGPV SVAMANGSSY GQNQSYVGSF 240 PAKTGITFPI SSSPNSRGKQ FPFLQEEEDS SRMTSCIHDS DCALSLLSSS SSHLLQPQPP 300 LSLSQETVFY GSGLFENASA VSDGSGNEAV PLPQTFPPFH W* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-29 | 97 | 177 | 4 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 160 | 177 | KKSCRKRLDGHNRRRRKP |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Weak increase of expression during floral induction. {ECO:0000269|PubMed:14573523}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00142194001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009132698.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 13A | ||||
Refseq | XP_009132699.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 13A | ||||
Refseq | XP_009132700.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 13A | ||||
Swissprot | B9DI20 | 1e-164 | SP13A_ARATH; Squamosa promoter-binding-like protein 13A | ||||
Swissprot | P0DI11 | 1e-164 | SP13B_ARATH; Squamosa promoter-binding-like protein 13B | ||||
TrEMBL | A0A397ZV41 | 0.0 | A0A397ZV41_BRACM; Uncharacterized protein | ||||
STRING | Bra022766.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4111 | 27 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 1e-141 | SBP family protein |
Publications ? help Back to Top | |||
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