![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00142144001 | ||||||||
Common Name | GSBRNA2T00142144001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 786aa MW: 86032.8 Da PI: 6.972 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.7 | 2.2e-18 | 292 | 391 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+l+ sd+++ grlvlpk +ae++ +++ e++ l+++d +g++W++++++ +++s++yvl+ G ++ L++gD+v+F++++ GSBRNA2T00142144001 292 FEKTLSASDAGRIGRLVLPKACAEAYfpPISQSEGIPLKIQDVRGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQSMMLQAGDTVTFSRVD 380 99**************************666678889***************9989999999***9.********************765 PP SSEE..EEEEE- CS B3 87 rsefelvvkvfr 98 +++l +++++ GSBRNA2T00142144001 381 -PGGKLIMGARK 391 .88888877765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.6E-28 | 289 | 393 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.62E-19 | 289 | 387 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.56E-23 | 290 | 391 | No hit | No description |
Pfam | PF02362 | 8.0E-16 | 292 | 391 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.5E-22 | 292 | 393 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.673 | 292 | 393 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 13.771 | 540 | 590 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 8.6E-10 | 546 | 587 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 786 aa Download sequence Send to blast |
MFEVKTGSKV CMNASCGSTS TVEWKKGWPL RSGSLADLCF RCGSAYETSL FCETFHLEQS 60 GWRDCYLCNK RLHCGCIASK LMVEFMDYGG VGCTSCTNCH QLNLNKRGEN PVVFSRLAMN 120 SPHTNGESGI SIRSEADLFS QSQPLVNGDD KREEFMAHRG FANFMKPDNN TNNNNAGEMH 180 EPSQPSLNMA LATLPYSPSF ATPVDGNKLM AAASQSHSHI GQCSASSILQ KPSKSVPGTP 240 PGTSKSAQAR IGRPPVEGRG KGHLLPRYWP KYTDKELQQI SGNLNLNIVP LFEKTLSASD 300 AGRIGRLVLP KACAEAYFPP ISQSEGIPLK IQDVRGKEWT FQFRFWPNNN SRMYVLEGVT 360 PCIQSMMLQA GDTVTFSRVD PGGKLIMGAR KAAYTVDMQG CGLTNGTSNE DTSSSGVTEN 420 PTSINASSQI PEELKGVPEH LSSPYGVGSS LKKSEMNGGR ICDDPSRVKD KKRTRTIGAK 480 NKRLLLRSEE VRVTWEEAQE LLRPSPNAKP TVVVVEDHEF EEFDEPPVFG KRTILTSKPS 540 GEQERWASCD DCTKWRRLPV DALLPAKWTC SDNVWDVNRC SCSAPEESLK DLENVLRAGK 600 EYKKRRIQAA KTEEEPSGLD ALASAASAAV LGDALGGDSE VATTTRHPRH RVGCSCIVCI 660 QPPSGKGRHK PTCGCTVCST VKRRFKTLMM RRKKKQLERD EIAAAAEAYE EHNNKEATEQ 720 GETDENNGEK EGRIDLNSDP YNREDVEAEK EDTKGRECSG VADEVLGLTE LGGEAASCEE 780 LKAAT* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 7e-84 | 270 | 400 | 2 | 132 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 681 | 693 | KRRFKTLMMRRKK |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Bna.14877 | 2e-90 | seed |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers and at lower levels in roots, stems and leaves. {ECO:0000269|PubMed:15894743}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL2/HSL1. {ECO:0000269|PubMed:15894743, ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00142144001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009132737.1 | 0.0 | PREDICTED: B3 domain-containing transcription repressor VAL1-like | ||||
Swissprot | Q8W4L5 | 0.0 | VAL1_ARATH; B3 domain-containing transcription repressor VAL1 | ||||
TrEMBL | M4E201 | 0.0 | M4E201_BRARP; Uncharacterized protein | ||||
STRING | Bra022801.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6923 | 24 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G30470.1 | 0.0 | high-level expression of sugar-inducible gene 2 |