PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00141953001
Common NameGSBRNA2T00141953001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 147aa    MW: 17158 Da    PI: 10.5451
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00141953001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind50.36.4e-16151132102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHH....HSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX.X CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpk....yFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks.F 86 
                          F k +y +++d++l+ ++sws+n++sf+++d+ ef+++vLp+      +  nf+ F+  L+ YgF +vk ++++        +  h++ F
  GSBRNA2T00141953001  15 FYKGVYAVVDDSSLDAVVSWSKNKKSFIIWDPIEFQRRVLPTgrerRIRSLNFSMFMADLKYYGFIRVKGSKHR-------YHIGHPKyF 97 
                          88899***********************************86555589999********************988.......778888879 PP

                          XXXXXXXXXXXXXXXX CS
         HSF_DNA-bind  87 kkgkkellekikrkks 102
                           +gk el++k++ +++
  GSBRNA2T00141953001  98 VRGKPELMKKMQEEAH 113
                          **********998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.45E-1611109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.0E-1111111IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.1E-1813109IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.5E-1715110IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MHVPVTVTDY SLSSFYKGVY AVVDDSSLDA VVSWSKNKKS FIIWDPIEFQ RRVLPTGRER  60
RIRSLNFSMF MADLKYYGFI RVKGSKHRYH IGHPKYFVRG KPELMKKMQE EAHEKRMHKF  120
DQDRAMRKKA KARALELADT LGDLGL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00141953001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2411461e-124AC241146.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH072P15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013744498.11e-103heat stress transcription factor A-4a-like
TrEMBLA0A3P5ZH521e-104A0A3P5ZH52_BRACM; Uncharacterized protein
STRINGBra022949.1-P1e-101(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1817268
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77570.15e-12Winged helix-turn-helix transcription repressor DNA-binding
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]