PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00141942001
Common NameGSBRNA2T00141942001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 450aa    MW: 49393.5 Da    PI: 7.125
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00141942001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.81.5e-06350370526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          +C+ff + G+C  G++C+F H+
  GSBRNA2T00141942001 350 PCKFFGQ-GWCANGNSCRFLHV 370
                          7******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037671.7E-2941153IPR005519Acid phosphatase, class B-like
PfamPF037674.8E-11154206IPR005519Acid phosphatase, class B-like
SuperFamilySSF902292.22E-6345369IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.596345372IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4350372IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-4350370IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MACSRNSLVS FFILGLFTVL ISPAISSRVL SSTKRPVNGE SRSSVASYCE SWRLAVETNN  60
AGTWKVVPSK CVSSLETYYN GGQFDKDYNV VARYALAFAK TVKIGGDGKD AWVFDVDETL  120
LSNLEYYKAN GYGSEPYNSK KFHEWVVQGT APAERRITEK NLHDAGYFGW EHLLLRGHED  180
QGKAAVKYKS EQRSRMVKKG YILHGNTEPP PTTTMKISLN NKNYDENVNY DDSLSSLSFP  240
DHAAPNTPPS LAGKLATQNT FEMSDSDMDI DDDDVQVHVQ RTIAGDSGLL LAKPSDSQSR  300
NDVKKHLDEN SGKNNTMLGE AKDMLLSRFP APAPSFPLVN GPEQKRASLP CKFFGQGWCA  360
NGNSCRFLHV KENMNGTSQQ QWVNHMAGAS GIQSVEGENG VASLVNPSGG HEILFVPSLG  420
NMERGVYQRV VLFSLRTGMC LLIALVPSH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4fyp_A6e-194920642227Vegetative storage protein 1
4fyp_B6e-194920642227Vegetative storage protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00141942001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2411460.0AC241146.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH072P15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009132962.20.0PREDICTED: protein FRIGIDA-ESSENTIAL 1-like
TrEMBLM4E2F70.0M4E2F7_BRARP; Uncharacterized protein
STRINGBra022958.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.15e-26C3H family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]