PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00141838001
Common NameGSBRNA2T00141838001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family E2F/DP
Protein Properties Length: 465aa    MW: 50710.4 Da    PI: 4.6582
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00141838001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP76.52.5e-24147212171
              E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                          r+++sL+llt+k ++l++++e+g+++ln++a+ L   +v  ++RRiYDi+NVLe+++liek  kn+i wkg
  GSBRNA2T00141838001 147 RYDSSLGLLTKKCVNLIKQAEDGMLDLNKAAEVL---EV--QKRRIYDITNVLEGIDLIEKPFKNRILWKG 212
                          6899******************************...99..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.1E-26143214IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.45E-15147210IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.1E-29147212IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.0E-21149212IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF1440741.73E-32225329No hitNo description
CDDcd146603.56E-48225329No hitNo description
PfamPF164215.0E-33228327IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MSGGVRPSPG HSQPPPSSSN PVVPPIRRHL AFASTKPPFH PSDYRRFTPS YDSSSLCGIV  60
DREEDAVVLR SPSRKRKSMM DVVTTNSNGF TSSGSTSIHN SPCHTPVSAK GGRVNTKSRA  120
KGTQSVPQTP ISNAGSPATL TPSGSCRYDS SLGLLTKKCV NLIKQAEDGM LDLNKAAEVL  180
EVQKRRIYDI TNVLEGIDLI EKPFKNRILW KGVDASRPGD VDADVAVLQA EIENLNLEEQ  240
ALDSQIRETE ERLRDLSENE KNQKWLFVTE EDIKSLPGFQ NQTLIAVKAP HGTTLEVPDP  300
DEAGDVPQRR YRIILRSTMG PIDVYLVSEF ENTNGSVAPP ACLPPIASCS GSTENHDIEA  360
LTRDNTETAI EHQMSQDHAH AQPGDTSDLN YLQEQVGGML KITPSDIEND DTDYWLLSNA  420
EISMTDIWNT DSGIDWDYGI ADVSTPPPVM GEEIAPSAID SKPR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A5e-21142213274PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17277SRKRKS
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in a cell cycle-dependent manner. Most abundant in early S phase. Decreased expression during the passage into G2. {ECO:0000269|PubMed:11108847, ECO:0000269|PubMed:11669580, ECO:0000269|PubMed:11786543}.
UniprotTISSUE SPECIFICITY: Highly expressed in the shoot apical meristem, emerging leaf primordia, and vascular tissues of young leaf primordia. Expressed in flowers, in epidermis and cortex of hypocotyls, and at lower levels in leaves. {ECO:0000269|PubMed:11108847, ECO:0000269|PubMed:11889041}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA cooperatively with DP proteins through the E2 recognition site, 5'-TTTC[CG]CGC-3' found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The binding of retinoblastoma-related proteins represses transactivation. Regulates gene expression both positively and negatively. Activates the expression of E2FB. Involved in the control of cell-cycle progression from G1 to S phase. Stimulates cell proliferation and delays differentiation. {ECO:0000269|PubMed:11669580, ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11862494, ECO:0000269|PubMed:11889041, ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:12913157, ECO:0000269|PubMed:15377755, ECO:0000269|PubMed:16514015, ECO:0000269|PubMed:19662336}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00141838001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013734331.10.0transcription factor E2FA-like isoform X1
SwissprotQ9FNY00.0E2FA_ARATH; Transcription factor E2FA
TrEMBLA0A398A3I80.0A0A398A3I8_BRACM; Uncharacterized protein
STRINGBra023047.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80828121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36010.10.0E2F transcription factor 3
Publications ? help Back to Top
  1. Magyar Z, et al.
    Arabidopsis E2FA stimulates proliferation and endocycle separately through RBR-bound and RBR-free complexes.
    EMBO J., 2012. 31(6): p. 1480-93
    [PMID:22307083]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]