PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00140710001
Common NameGSBRNA2T00140710001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 390aa    MW: 41811.7 Da    PI: 7.6345
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00140710001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.34.7e-124469227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                         +++ C +++rtG C yG+rC+F+H+p
  GSBRNA2T00140710001 44 DEPDCVYYLRTGVCGYGSRCQFNHPP 69
                         6899********************97 PP
2zf-CCCH37.92.9e-1291115327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          ++ C++f+rtG+Ck+G++Ck++H++
  GSBRNA2T00140710001  91 QPVCQHFMRTGECKFGASCKYHHPR 115
                          589********************96 PP
3zf-CCCH40.93.3e-13140164226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          ++++C++++rtG+Ck+G++CkF+H+
  GSBRNA2T00140710001 140 GEKECPYYMRTGQCKFGSTCKFHHP 164
                          7899********************9 PP
4zf-CCCH36.86.7e-12285311127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +++++C +f++tG Ck+G +C+++H++
  GSBRNA2T00140710001 285 PGQPECTYFMKTGDCKFGTSCRYHHPM 311
                          5789*********************95 PP
5zf-CCCH35.51.7e-11331357127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          ++t++C++fa+ G+Ck G+ CkF H++
  GSBRNA2T00140710001 331 PGTAPCSHFAQHGICKLGPACKFDHSM 357
                          68***********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.1924270IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-54269IPR000571Zinc finger, CCCH-type
PfamPF006429.4E-94469IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-64670IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-64868IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-688115IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.86388116IPR000571Zinc finger, CCCH-type
SMARTSM003568.3E-789115IPR000571Zinc finger, CCCH-type
PfamPF006427.3E-1092115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-593115IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.854138166IPR000571Zinc finger, CCCH-type
SMARTSM003569.7E-7138165IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-11140164IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-6141166IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-5144163IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.225284312IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-6284311IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-9286311IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-6288312IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-4290310IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.014330358IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-6330357IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.1E-5331358IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-9331356IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-4333356IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MEQQGGTDEE GSRSDPGTET GIEASMSRLG LRGGGNESYP ERPDEPDCVY YLRTGVCGYG  60
SRCQFNHPPN RPPVLGGLRA EAGEFPERME QPVCQHFMRT GECKFGASCK YHHPRQGGGG  120
GDSVTSPISF NHMGFPLRPG EKECPYYMRT GQCKFGSTCK FHHPVPPGDQ VPSQQQLSTG  180
PAIYPPLQSQ PSQQFGVVVP RPQLLPGSYV QNPYGTYSQM VLPPGMVSYS GWNPYQPSVN  240
AIPSPGTQPS MGPSSVYGTT PLSPSAPAYQ SGPSSNKEHS FPQRPGQPEC TYFMKTGDCK  300
FGTSCRYHHP MEAAASPKGV ALSNIGLPLR PGTAPCSHFA QHGICKLGPA CKFDHSMTSS  360
LNDQGTELHS SSSIKPTTTT ISIEVKTSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00140710001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013622850.10.0PREDICTED: zinc finger CCCH domain-containing protein 58-like
SwissprotQ6NPN30.0C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A3P6A0B10.0A0A3P6A0B1_BRAOL; Uncharacterized protein
STRINGBo3g013210.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17792786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.10.0C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]