PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00140686001
Common NameGSBRNA2T00140686001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 338aa    MW: 38100 Da    PI: 6.4235
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00140686001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM176.86e-55211491129
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                          lppGfrFhPtdee+++ yLk+kv ++++++  ++ e+d++k+ePwdLp k +k +eke yfF++rd+ky+tg r+nrat+sgyWkatgkd
  GSBRNA2T00140686001  21 LPPGFRFHPTDEEIISSYLKEKVLDSRFTA-VAMGEADLNKCEPWDLPsKLAKMGEKEFYFFCQRDRKYPTGMRTNRATESGYWKATGKD 109
                          79*************************999.67***************666677999********************************* PP

                  NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                          ke+++ kg lvg+kktLvfy+grap+gekt+Wvmheyrle
  GSBRNA2T00140686001 110 KEIFKGKGCLVGMKKTLVFYRGRAPRGEKTNWVMHEYRLE 149
                          *****9********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.67E-6118174IPR003441NAC domain
PROSITE profilePS5100558.07221173IPR003441NAC domain
PfamPF023655.1E-2922148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MAVVVESGVV LNHGGDELVD LPPGFRFHPT DEEIISSYLK EKVLDSRFTA VAMGEADLNK  60
CEPWDLPSKL AKMGEKEFYF FCQRDRKYPT GMRTNRATES GYWKATGKDK EIFKGKGCLV  120
GMKKTLVFYR GRAPRGEKTN WVMHEYRLEG IYSYHNLPKT ARDDWVVCRV FHKNNPSTTT  180
QQMTRIPMED LARTDSLENI DHFLDFSSLP PLIDPSFTGQ LNFKPINPPT YDISSPIQPH  240
HFNSSYQPIF NHQGFGSASG SGSTYNNNNN NKEMVKMEQS LVSVSQETCL SSDVNATTTA  300
EVSSGPAMKQ EMSMMGMVNG SKSYEDLCDL RGILWDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-511917515167NO APICAL MERISTEM PROTEIN
1ut4_B8e-511917515167NO APICAL MERISTEM PROTEIN
1ut7_A8e-511917515167NO APICAL MERISTEM PROTEIN
1ut7_B8e-511917515167NO APICAL MERISTEM PROTEIN
3swm_A8e-511917518170NAC domain-containing protein 19
3swm_B8e-511917518170NAC domain-containing protein 19
3swm_C8e-511917518170NAC domain-containing protein 19
3swm_D8e-511917518170NAC domain-containing protein 19
3swp_A8e-511917518170NAC domain-containing protein 19
3swp_B8e-511917518170NAC domain-containing protein 19
3swp_C8e-511917518170NAC domain-containing protein 19
3swp_D8e-511917518170NAC domain-containing protein 19
4dul_A8e-511917515167NAC domain-containing protein 19
4dul_B8e-511917515167NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.161691e-156microspore-derived embryo
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00140686001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6413570.0KP641357.1 Brassica napus NAC transcription factor 87.1 (NAC87.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013625819.10.0PREDICTED: NAC domain-containing protein 92-like
RefseqXP_013681854.10.0NAC domain-containing protein 92-like
SwissprotQ9FK440.0NAC87_ARATH; NAC domain-containing protein 87
TrEMBLA0A3P5ZL940.0A0A3P5ZL94_BRACM; Uncharacterized protein
TrEMBLA0A3P6AH400.0A0A3P6AH40_BRAOL; Uncharacterized protein
STRINGBo3g013050.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22692775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.20.0Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]