PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00140409001
Common NameGSBRNA2T00140409001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 122aa    MW: 13818.6 Da    PI: 4.8263
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00140409001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM30.11.4e-0964115148
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....leleev.ikevdiykvePwdLp 48 
                          lp+G++F+Ptdee++ e+L++k+  +       ++++ ++  di++++P++L+
  GSBRNA2T00140409001  64 LPKGVKFQPTDEEVI-EHLEAKCGIDGskldPFIQDFfFSVDDINYTHPQNLR 115
                          799************.99****877663343222334245559*********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.89E-1151117IPR003441NAC domain
PROSITE profilePS5100512.05364121IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MKAHLSCFRQ EMTWIVDGPW IVKNVKNVSV SSDLQIEDCG AYINCPNCGY RNDNRNVLTP  60
WPGLPKGVKF QPTDEEVIEH LEAKCGIDGS KLDPFIQDFF FSVDDINYTH PQNLRGNNLF  120
L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00140409001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1637922e-36AL163792.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T15N1 (ESSA project).
GenBankAL1638172e-36AL163817.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F18O22 (ESSA project).
GenBankCP0026882e-36CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022565770.12e-64SUPPRESSOR OF GAMMA RESPONSE 1-like
TrEMBLA0A3P6A2E69e-80A0A3P6A2E6_BRAOL; Uncharacterized protein
STRINGBo3g009820.11e-75(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2356234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14490.15e-48NAC domain containing protein 85
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]