PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00140381001

Common Name

GSBRNA2T00140381001, LOC106418517, LOC106431428

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 262aa MW: 29749.7 Da PI: 9.4145

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00140381001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.8	0.0016	67	91	2	23
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 +Cp C+++ ++ +n++ H +t H GSBRNA2T00140381001 67 SCPivGCPERLKSLDNFEDHYKTrH 91 69999*****************999 PP
2	zf-C2H2	14.7	8.6e-05	94	116	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C+++++++ +L Hi+ H GSBRNA2T00140381001 94 SCSVCSRVYPTSRLLSIHISEaH 116 6******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.079	66	91	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	68	91	IPR007087	Zinc finger, C2H2
SMART	SM00355	5	93	116	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	95	116	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.069	131	156	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	133	156	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MAMGMAVGEL GFPYWNPLRR RFPPDSPFFA SGNVERELLA KQVALDFTED EITNLQTIVE 60 TESRRISCPI VGCPERLKSL DNFEDHYKTR HTASCSVCSR VYPTSRLLSI HISEAHDSFF 120 QAKVARGYDM YECLVEGCGL KFKSYKARHR HLIDKHKFPT TFEFFKRTQL SKKRREKLQR 180 QRVPKLKHEE DKEEASSDAM EVEDKASLDG LVSALSTLTT SDTTPSNVSF GRRHGRGLTF 240 VPRSVHREKP TNSSSTPGSK T*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	171	176	KKRREK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.5985	0.0	seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00140381001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493748	0.0	AB493748.1 Arabidopsis thaliana At5g14140 mRNA for hypothetical protein, partial cds, clone: RAAt5g14140.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013714693.1	0.0	zinc finger protein 511-like
Refseq	XP_013727685.1	0.0	zinc finger protein 511-like
TrEMBL	A0A0D3B132	0.0	A0A0D3B132_BRAOL; Uncharacterized protein
STRING	Bo3g009650.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9971	26	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14140.1	1e-166	zinc ion binding;nucleic acid binding;zinc ion binding

Link Out ? help Back to Top
Entrez Gene	106418517 \| 106431428

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]