PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00139554001
Common NameGSBRNA2T00139554001, LOC106431844
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 516aa    MW: 57752.9 Da    PI: 6.4647
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00139554001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.23.9e-29231290159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r++ed ++++ tYeg+H h+
  GSBRNA2T00139554001 231 MNDGCQWRKYGQKIAKGNPCPRAYYRCTIApSCPVRKQVQRCSEDMSILISTYEGTHSHP 290
                          58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-30216292IPR003657WRKY domain
SuperFamilySSF1182902.22E-26224292IPR003657WRKY domain
PROSITE profilePS5081127.76226292IPR003657WRKY domain
SMARTSM007742.7E-34231291IPR003657WRKY domain
PfamPF031061.1E-25232290IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MEKEEFLRSG HGREERNEEM RKLDSDQEHD HIIRSKLDSI KVEMEEAKDE NRRLKSSLSR  60
TKKEFEILQT QYNQLMVIIH EDPNKFSPKG YNQHKEEDED KERTSDREEL VLLSLGRRLK  120
SPVPSGSMTN KEEKMKDFMK ETDDDKRINE QGLSMGFEYK DLSNPSEKLE VDHNQEKTSL  180
EVSNSNKIQS ENSFGFKNDG DEHEDEEEPL PQNIAKKTRV SVRARCETPT MNDGCQWRKY  240
GQKIAKGNPC PRAYYRCTIA PSCPVRKQVQ RCSEDMSILI STYEGTHSHP LPMSATAMAS  300
ATSAAASMLL SRASSSSAAD LHGINFSLSS NSITPKPLLQ TSSGHPTVTL DLTTTSSSQQ  360
PFLSMLNRFS APPSNVPRSN SYPSTNLSFS NNTNTLMNWG GGSNRNEQYR APYGNISTHQ  420
QSPYQHMIQT RAAGLSFDTF GRSSSSSPHP TQNSLDNVNF KNITHDQVQS LPAETIKAIT  480
TDPNFQSALA TALSSIIGGD LKIDNVTRNE AEKSP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-20218292174WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00139554001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300680.0KF430068.1 Brassica rapa WRKY transcription factor 61 (WRKY61) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013728123.10.0probable WRKY transcription factor 61
SwissprotQ8VWV60.0WRK61_ARATH; Probable WRKY transcription factor 61
TrEMBLA0A3P6G8570.0A0A3P6G857_BRAOL; Uncharacterized protein
STRINGBo8g068160.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM126631729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18860.10.0WRKY DNA-binding protein 61
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Gao R,Liu P,Yong Y,Wong SM
    Genome-wide transcriptomic analysis reveals correlation between higher WRKY61 expression and reduced symptom severity in Turnip crinkle virus infected Arabidopsis thaliana.
    Sci Rep, 2016. 6: p. 24604
    [PMID:27086702]