PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00138920001

Common Name

GSBRNA2T00138920001, LOC106438285

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Dof

Protein Properties

Length: 375aa MW: 41121 Da PI: 8.251

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00138920001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121	4.1e-38	75	136	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 ++++++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGg+++knk+sss GSBRNA2T00138920001 75 PQEKVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSKKNKRSSS 136 6899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-27	74	126	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.4E-32	77	133	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.425	79	133	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	81	117	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MDATKWTQGF QDMMNVKPME QIMIPNNNTH QSNTMSDARP NTILTSNGVS AAGATVSGVS 60 NNNNTAVVVE RKARPQEKVN CPRCNSTNTK FCYYNNYSLT QPRYFCKGCR RYWTEGGSLR 120 NVPVGGSSKK NKRSSSSSNI LQATPSSLGL TTTLPDLNPP ILFSNQIPNK SKGSSHDLNL 180 LSFPVMQDQN HHHHHGHMSQ FLQMPKMEGN GNITHQQPSS LYGSSSSPVS ALELLRTGAN 240 VSSRSGINSF MPSGPMLDSS NNVMYTSSGF PTMVDYKPSN LSFSTDHHQE MGHNNTSRSD 300 DHNDHNQGRI LFPFGDQMKE LTSSITQEVD HDDNQQQKSH GDNNNNNNNN NSSSSPNTGY 360 WSGMFNTTGG GSSW*

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MDATKWTQGF QDMMNVKPME QIMIPNNNTH QSNTMSDARP NTILTSNGVS AAGATVSGVS  60
NNNNTAVVVE RKARPQEKVN CPRCNSTNTK FCYYNNYSLT QPRYFCKGCR RYWTEGGSLR  120
NVPVGGSSKK NKRSSSSSNI LQATPSSLGL TTTLPDLNPP ILFSNQIPNK SKGSSHDLNL  180
LSFPVMQDQN HHHHHGHMSQ FLQMPKMEGN GNITHQQPSS LYGSSSSPVS ALELLRTGAN  240
VSSRSGINSF MPSGPMLDSS NNVMYTSSGF PTMVDYKPSN LSFSTDHHQE MGHNNTSRSD  300
DHNDHNQGRI LFPFGDQMKE LTSSITQEVD HDDNQQQKSH GDNNNNNNNN NSSSSPNTGY  360
WSGMFNTTGG GSSW*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.14494	0.0	seed

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Turned off in siliques when they reached full maturation. Not expressed in developing or mature embryos.
Uniprot	TISSUE SPECIFICITY: Expressed in the vascular system of the mother plant, but not present in the seed and embryo. In maturing siliques, found all through the funiculus connecting the placenta to the ovule, but not in the ovule.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the activation of a component that would trigger germination as a consequence of red light perception.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00138920001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC232491	0.0	AC232491.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB049N04, complete sequence.
GenBank	AC241033	0.0	AC241033.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB045E05, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013734850.1	0.0	dof zinc finger protein DOF2.5
Swissprot	Q9ZPY0	0.0	DOF25_ARATH; Dof zinc finger protein DOF2.5
TrEMBL	A0A0D3B710	0.0	A0A0D3B710_BRAOL; Uncharacterized protein
TrEMBL	M4C8A1	0.0	M4C8A1_BRARP; Uncharacterized protein
STRING	Bra000429.1-P	0.0	(Brassica rapa)
STRING	Bo3g039340.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2528	26	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46590.2	0.0	Dof family protein

Link Out ? help Back to Top
Entrez Gene	106438285

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]