PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00138914001
Common NameGSBRNA2T00138914001, LOC106438291
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 309aa    MW: 34593.7 Da    PI: 8.9715
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00138914001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B398.34.9e-3131136199
                          EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-. CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld. 85 
                          f+kv tpsdv+k++rlv+pk++ae++    ++++ ++  l +ed++g+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F +  
  GSBRNA2T00138914001  31 FDKVVTPSDVGKLNRLVIPKQHAERYfpldSSSNGKGLILNFEDLTGKSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFLRCv 120
                          89***************************9666678999***********************************************9433 PP

                          .SS.SEE..EEEEE-S CS
                   B3  86 .gr.sefelvvkvfrk 99 
                           ++ ++ +l++ ++r+
  GSBRNA2T00138914001 121 gDTgRDSRLFIDWRRR 136
                          2335677788888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.2E-4125138IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.84E-3028121IPR015300DNA-binding pseudobarrel domain
CDDcd100177.27E-2629116No hitNo description
PfamPF023622.5E-2831136IPR003340B3 DNA binding domain
PROSITE profilePS5086314.26931137IPR003340B3 DNA binding domain
SMARTSM010195.5E-2431137IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MMTNLSLARK GEEEEAEAKK PTEEVEREHM FDKVVTPSDV GKLNRLVIPK QHAERYFPLD  60
SSSNGKGLIL NFEDLTGKSW RFRYSYWNSS QSYVMTKGWS RFVKDKKLDA GDIVSFLRCV  120
GDTGRDSRLF IDWRRRPKVP DYTTSTSHFP AGAMFPRFYS FQTATTSTSY NPYNHQQPRH  180
HHSGYCYPQI PREFGYGYVV RSVDQRAVVA DPLVIESVPV MMHGGARVNQ AAVGTAGKRL  240
RLFGVDMECG ESGVTNSTEE ESSSSGGSLP RGGASPSSSM FQLRLGNSSE DDHLFKKGKS  300
SLPFNLDQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-76261393116B3 domain-containing transcription factor NGA1
5os9_B5e-76261393116B3 domain-containing transcription factor NGA1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.165149e-72leaf
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00138914001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2324910.0AC232491.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB049N04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013734859.10.0B3 domain-containing transcription factor NGA1
SwissprotO827991e-158NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLA0A397ZYT00.0A0A397ZYT0_BRACM; Uncharacterized protein
STRINGBra000434.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13072899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.11e-146B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  4. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  5. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  6. Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  7. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]