PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00138423001
Common NameGSBRNA2T00138423001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 602aa    MW: 68329.1 Da    PI: 5.4859
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00138423001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS393.91.7e-1202265961374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          +++lL++cA+av+s d+++a + L++++e++s++gd++qRl  ++++AL+ar+++    ++k+ +    s++++++ l+a+k f++++P+
  GSBRNA2T00138423001 226 MRNLLMQCAQAVASFDQSRAFEKLKEIREHSSSHGDATQRLGYHLANALEARITG----TMKTPAFDVLSRTSMVDILKAYKEFVQACPT 311
                          579***************************************************9....77777777777788***************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                          l +++ taN+ I e +++++++Hi+Df+i +G+QWp+L+qaL++Rp+gpp+lR+Tg++ p++g   +e++eetg+rL++f++++ vpfe+
  GSBRNA2T00138423001 312 LAMCYYTANRSIFELASKATALHIVDFGILYGFQWPCLIQALSARPGGPPKLRVTGIELPQPGfrPSERVEETGRRLKRFCDKFSVPFEY 401
                          **************************************************************9*************************** PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                          n+ +ak++++++l+eL +++gE+++Vn++l+l++++de+vsl+s+rd+ Lkl+++++P+++v++e +  +ns+ Fl+rf ea+ ++s+lf
  GSBRNA2T00138423001 402 NF-IAKAWDTITLDELVINSGETTVVNCILRLQYTPDETVSLNSPRDTALKLFRDINPDLFVFAEINGTYNSPFFLTRFREAMFHCSSLF 490
                          **.7************************************************************************************** PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                          d++e+++++e++ r+ vErel+ +++++v+acegaer++r et+++W+ r+ +aGF+p++l+++++k+ k l+r  + + + ++++++++
  GSBRNA2T00138423001 491 DMFESNISEENDCRTLVERELIIKDAMSVIACEGAERFARPETYKQWQVRILRAGFRPAKLNKQIMKEGKELVRDRYHKDFVIDNDNHWM 580
                          *****************************************************************************888********** PP

                 GRAS 359 vlgWkdrpLvsvSaWr 374
                          ++gWk+r L+++S+W+
  GSBRNA2T00138423001 581 FQGWKGRVLYALSCWK 596
                          ***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.677200576IPR005202Transcription factor GRAS
PfamPF035145.9E-118226596IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MDAILQVPVD GFRFDNGSGS CCKPRNNLDS GTSRFTCFKE SESQNLSSPT ESTESQNRSS  60
QTESTVCSTN HPVLKYINDM LMEEDIEEQS CMLEDSLALQ AAERSFFEVL QEDQKPSDQD  120
DSSLENLSPL HQPTSGFTGS PEITSEESTR RYHRLRDDEE EDDLQGGRKS KLPAISVVDE  180
LAEKLEEVLL VCQKKDHGEA TPNKTGRAKG SLNRSKPQKS DQPVDMRNLL MQCAQAVASF  240
DQSRAFEKLK EIREHSSSHG DATQRLGYHL ANALEARITG TMKTPAFDVL SRTSMVDILK  300
AYKEFVQACP TLAMCYYTAN RSIFELASKA TALHIVDFGI LYGFQWPCLI QALSARPGGP  360
PKLRVTGIEL PQPGFRPSER VEETGRRLKR FCDKFSVPFE YNFIAKAWDT ITLDELVINS  420
GETTVVNCIL RLQYTPDETV SLNSPRDTAL KLFRDINPDL FVFAEINGTY NSPFFLTRFR  480
EAMFHCSSLF DMFESNISEE NDCRTLVERE LIIKDAMSVI ACEGAERFAR PETYKQWQVR  540
ILRAGFRPAK LNKQIMKEGK ELVRDRYHKD FVIDNDNHWM FQGWKGRVLY ALSCWKPAKK  600
Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-432305968375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.180310.0bud| leaf| microspore-derived embryo| root| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves, sepals, stamen and pistil, and in the quiescent center of root meristem. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00138423001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013711631.10.0scarecrow-like protein 30 isoform X1
SwissprotQ9SNB80.0SCL30_ARATH; Scarecrow-like protein 30
TrEMBLA0A398AVQ10.0A0A398AVQ1_BRACM; Uncharacterized protein
STRINGBo1g070830.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36462561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46600.10.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]