PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00137663001
Common NameGSBRNA2T00137663001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 442aa    MW: 48685.3 Da    PI: 9.1967
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00137663001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-055375123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C++C+k F r  nL+ H r H
  GSBRNA2T00137663001 53 FVCEICNKGFQRDQNLQLHKRGH 75
                         89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.7E-65275IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.13E-65275No hitNo description
SMARTSM003550.0175375IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9075375IPR007087Zinc finger, C2H2
PfamPF121713.7E-55375IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002805575IPR007087Zinc finger, C2H2
SMARTSM0035525095125IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.13E-6125150No hitNo description
SMARTSM00355180130150IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MSNLTSASGD QTSVSSGNRT EAKQQQRNQP GNPDPESEVI TLSPKTLMAR NRFVCEICNK  60
GFQRDQNLQL HKRGHNLPWK LKQRSNKEVI RKKVYVCPEA SCVHHDPTRA LGDLTGIKKH  120
FCRKHGEKKW KCDKCSKKYA VQSDCKAHSK TCGTKEYRCD CGTIFSRRDS FTTHRAFCEA  180
LAKETAREVV IPQEQNHQPN PILVHQSTFH HQHHHQAQPN MNFSSSNTSS NHLHTFSVKK  240
EQQQSNDHII NYHHQNIPPW LAPQDLTFSN PNPNNGGGGL FSLAASPAMS ATALLQKAAQ  300
MGSKKTPPLP PTTDFERSAH HNTLTTTMAA MMTSPSGYIS SNNNNQVLFQ GYNASDFDHH  360
GGEEAFDDTF SAFLRTNADT TTAGSDKKKS GGGGGVGEGL TRDFLGIRPL MSHNEILSIA  420
GLGNCISGAA SNQLHPKPWQ G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-30126187364Zinc finger protein JACKDAW
5b3h_F5e-30126187364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17992KLKQRSNKEVIRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.180571e-173flower| leaf| seed| stem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00137663001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3617970.0AF361797.1 Arabidopsis thaliana AT3g13810/MCP4_2 mRNA, complete cds.
GenBankAY0916930.0AY091693.1 Arabidopsis thaliana AT3g13810/MCP4_2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009135331.10.0PREDICTED: protein indeterminate-domain 11-like isoform X3
RefseqXP_009135332.10.0PREDICTED: protein indeterminate-domain 11-like isoform X4
RefseqXP_022572115.10.0protein indeterminate-domain 11-like isoform X1
SwissprotQ9LRW70.0IDD11_ARATH; Protein indeterminate-domain 11
TrEMBLA0A398A4H70.0A0A398A4H7_BRACM; Uncharacterized protein
TrEMBLA0A398A8B90.0A0A398A8B9_BRACM; Uncharacterized protein
STRINGBra001523.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13810.10.0indeterminate(ID)-domain 11
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]