PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00137332001

Common Name

GSBRNA2T00137332001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 439aa MW: 47730.5 Da PI: 6.9085

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00137332001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.1	0.00075	327	366	10	54
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + R +++ ++++ L++l+ + +K + a++L +A+eY k L GSBRNA2T00137332001 327 KVRKEKMGDRIAALQQLVSPF-----GKTDAASVLSEAIEYTKFL 366 56889999*********98.....8************8877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.074	317	366	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.16E-4	327	371	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.8E-8	327	377	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.54E-10	327	381	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence Send to blast
MGDHHDFINS GSWWKVSSSS STSSSMRASS IVSGGSDVFD EKLHSSLATD HHLQMIGLGL 60 SSQSPVDQWN QPLLRGDSKA ETSFGAMLQE NLNLDATSNA NAIQESDSSN HQALWRDTQI 120 NNSDFKPQLN MTSSNRGFFL EHQFSPHGSS STDSSTVTCQ GFAVDNSLYG TATTPSSSSA 180 MFHQGAGFNL PGSSDQQPLR NHQQRNLGYG NYDQLASTWF SRSSPPKPNS PLRFSNNATF 240 WNPAATAGNV GPTHHDASSN FFPALRPPQI HAPSFDKQKA SICFLYIYHD ITKVPDSKSN 300 EVKRGGADQP AAKRAKSEAP SPSPASKVRK EKMGDRIAAL QQLVSPFGKT DAASVLSEAI 360 EYTKFLHQQV SALSNPYMKS GASLQHQQMS DHHKELEVSE EPDLRSRGLC LVPVSSIFPV 420 TQDTTVDFWT PTFGGTFR*

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence Send to blast

MGDHHDFINS GSWWKVSSSS STSSSMRASS IVSGGSDVFD EKLHSSLATD HHLQMIGLGL  60
SSQSPVDQWN QPLLRGDSKA ETSFGAMLQE NLNLDATSNA NAIQESDSSN HQALWRDTQI  120
NNSDFKPQLN MTSSNRGFFL EHQFSPHGSS STDSSTVTCQ GFAVDNSLYG TATTPSSSSA  180
MFHQGAGFNL PGSSDQQPLR NHQQRNLGYG NYDQLASTWF SRSSPPKPNS PLRFSNNATF  240
WNPAATAGNV GPTHHDASSN FFPALRPPQI HAPSFDKQKA SICFLYIYHD ITKVPDSKSN  300
EVKRGGADQP AAKRAKSEAP SPSPASKVRK EKMGDRIAAL QQLVSPFGKT DAASVLSEAI  360
EYTKFLHQQV SALSNPYMKS GASLQHQQMS DHHKELEVSE EPDLRSRGLC LVPVSSIFPV  420
TQDTTVDFWT PTFGGTFR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00137332001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK118054	1e-151	AK118054.1 Arabidopsis thaliana At3g20640 mRNA for putative bHLH transcription factor (bHLH123), complete cds, clone: RAFL19-30-D14.
GenBank	BT008580	1e-151	BT008580.1 Arabidopsis thaliana clone U50947 unknown protein (At3g20640) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022572267.1	0.0	transcription factor bHLH123-like isoform X1
Swissprot	Q8GXT3	0.0	BH123_ARATH; Transcription factor bHLH123
TrEMBL	A0A3P6A4H3	0.0	A0A3P6A4H3_BRACM; Uncharacterized protein
STRING	Bo3g076150.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4024	25	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]