PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00137238001
Common NameGSBRNA2T00137238001, LOC106417796
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 327aa    MW: 36568.9 Da    PI: 5.4735
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00137238001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.19.9e-16126177155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++Y+k+L+
  GSBRNA2T00137238001 126 QRMTHIAVERNRRKQMNDYLAVLRSLMPPS---YAQRGDQASIVAGAINYLKELE 177
                          79****************************...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.52E-13124181No hitNo description
SuperFamilySSF474591.44E-16125189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.304125176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-14125181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.1E-13126177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-10131182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.551252326IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MALEAVVYPQ DPFSLISCKD FQFHDFYFQQ EDNQDRLDTK NNIKLGQEQR QGLPRINYNG  60
KSGDTFTNDD YNYNDQEEDL QWPRDDPLYG SALDQPPPSD VAAGGGRRKR RRRTKSSKNK  120
EEIENQRMTH IAVERNRRKQ MNDYLAVLRS LMPPSYAQRG DQASIVAGAI NYLKELEHHL  180
QSIEPPLKSA TVPVDTGSAA AAADQINTIA ASSLGQFSEF FAFPQYLSRP SSSSVAEGMA  240
EIEVTMVESH ASVKILAKKR PKQLLKLAAS IQNLKLTVLH LNVTTCDDSV LYSISLKVEE  300
GSQLNTVEDI AAGMNQILRR IEEESS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106112RRKRRRR
2107111RKRRR
3107113RKRRRRT
4126137RMTHIAVERNRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00137238001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013713998.10.0transcription factor bHLH96
RefseqXP_022570108.10.0transcription factor bHLH96-like
SwissprotQ9C7T41e-171BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A398AI320.0A0A398AI32_BRACM; Uncharacterized protein
TrEMBLA0A3P6ALL20.0A0A3P6ALL2_BRACM; Uncharacterized protein
STRINGBra008017.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111627102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-168bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]