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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00137194001 | ||||||||
Common Name | GSBRNA2T00137194001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | AP2 | ||||||||
Protein Properties | Length: 458aa MW: 51659.8 Da PI: 6.5545 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 48.7 | 1.8e-15 | 264 | 323 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ ++++gr++A+++d ++ g +r ++++lg ++ +e+Aa+a++ a+ k++g GSBRNA2T00137194001 264 SQYRGVTKHRWTGRYEAHLWDnSCKkEGqsRRgRQVYLGGYDDEEKAARAYDLAAMKYWG 323 78*******************988886677557*************************98 PP | |||||||
2 | AP2 | 47.1 | 5.8e-15 | 366 | 417 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g GSBRNA2T00137194001 366 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 417 57****************988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.1E-11 | 264 | 323 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.71E-17 | 264 | 333 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 5.09E-21 | 264 | 333 | No hit | No description |
PROSITE profile | PS51032 | 19.006 | 265 | 331 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.1E-29 | 265 | 337 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.7E-16 | 265 | 332 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.5E-6 | 266 | 277 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.61E-25 | 366 | 426 | No hit | No description |
Pfam | PF00847 | 8.7E-10 | 366 | 417 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-17 | 366 | 425 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.019 | 367 | 425 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-33 | 367 | 431 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.7E-18 | 367 | 425 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.5E-6 | 407 | 427 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 458 aa Download sequence Send to blast |
MGERETLSRE RKGEEMNKWL GFSLTPHLRI SDRVQEEDEE NYVATNQQKA LMPHSDGSPF 60 FTDPLTHHPH PVWQYDINLN HDDDHHHDEE VPKLEDFSSN SHQTECPPIS GNYQTNVNCT 120 TMLNRLSPHG YLLCEQTVST PQYSNLDTNL SRDYGGSVSV FKSWLGQGTP TFPVSNTYVS 180 GEGSTSNTSN FSHEETDYNT SGSTLLLTMS HGAASDLINE LNVSVPVEEP VKVDEKRKSL 240 VGKSQAKEPV ETRKSVDSLG QRTSQYRGVT KHRWTGRYEA HLWDNSCKKE GQSRRGRQVY 300 LGGYDDEEKA ARAYDLAAMK YWGPTTHLNF PLSNYEKEIE ELNNMTRQEF VAMLRRNSSG 360 FSRGASIYRG VTRHHQHGRW QARIGRVAGN KDLYLGTFST QEEAAEAYDI AAIKFRGVNA 420 VTNFDICRYD VKRICSNSTI INSDQAKRSP SNSASGQ* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, seedlings, inflorescence, and siliques. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00137194001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013619296.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor AIL1 | ||||
Refseq | XP_013619297.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor AIL1 | ||||
Swissprot | Q1PFE1 | 0.0 | AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1 | ||||
TrEMBL | A0A0D3AQ53 | 0.0 | A0A0D3AQ53_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g076920.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11747 | 25 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72570.1 | 0.0 | AP2 family protein |
Publications ? help Back to Top | |||
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