PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00136782001

Common Name

GSBRNA2T00136782001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NF-YA

Protein Properties

Length: 299aa MW: 33096.7 Da PI: 6.571

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00136782001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	35.4	3.5e-11	166	201	1	38
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpy 38 +ep++VN KQ+++I+ R+++Rakle ++kl +k+rk y GSBRNA2T00136782001 166 NEPVFVNVKQFHAIM-RKEQRAKLETQNKL-IKARKVY 201 59**********9.6899******.9*988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51152	9.554	165	201	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	6.5E-8	167	201	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MDKKDSFTTA HSTPPYLNTS ISWGLPTESN VQSYDVTESL SLKVHARSKH VLNPTKIDFQ 60 DKDSSSTQST DQSSTEVATS GDDDDDDNPS RQISFSAKPD SFEKTQRKGF PNNIKSGSSY 120 TTGTSDIHFA PGKSNFSCFG GYLPHATVWN PKMVGRVPLP LDFIDNEPVF VNVKQFHAIM 180 RKEQRAKLET QNKLIKARKV YHIFMNLDMF TLLNDLEDLK DTMGNMSGFV AHQLHASNDL 240 GCSTTSGSDI TSVSDGVRRC EFQLSDCPSQ TKPTMYIHGQ SNDMHGGGRN TDHFSVHI*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in the whole plant, except roots. {ECO:0000269\|PubMed:11867211}.

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00136782001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC172859	1e-135	AC172859.1 Brassica rapa subsp. oleifera cultivar Inbred line 'Chiifu' clone KBrB023K01, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013601803.1	1e-174	PREDICTED: LOW QUALITY PROTEIN: nuclear transcription factor Y subunit A-8-like
Swissprot	Q9LNP6	1e-102	NFYA8_ARATH; Nuclear transcription factor Y subunit A-8
TrEMBL	A0A0D3DWS7	0.0	A0A0D3DWS7_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6GFT8	0.0	A0A3P6GFT8_BRAOL; Uncharacterized protein
STRING	Bo8g104770.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3349	27	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17590.4	1e-98	nuclear factor Y, subunit A8

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Djami-Tchatchou AT,Ntushelo K Expression Profile of Stress-responsive Arabidopsis thaliana miRNAs and their Target Genes in Response to Inoculation with Pectobacterium carotovorum subsp. carotovorum. Pak. J. Biol. Sci., 2017. 20(3): p. 147-153 [PMID:29023006]