PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00136609001 | ||||||||
Common Name | GSBRNA2T00136609001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | WOX | ||||||||
Protein Properties | Length: 291aa MW: 33988.5 Da PI: 6.2963 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.1 | 9.5e-21 | 57 | 115 | 3 | 56 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56 +R+++t+eq+ +Lee++ + +r+p++++++e+A+kl +++ ++V++WFqN++ +e+ GSBRNA2T00136609001 57 SRWNPTPEQTMVLEEVYSSgTRTPTTQQIQEIASKLqkygRIEGKNVFYWFQNHKSRER 115 7*****************99*************************************98 PP | |||||||
2 | Wus_type_Homeobox | 109.7 | 1.7e-35 | 56 | 117 | 3 | 64 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ++RW+PtpeQ ++Lee+y+sG+rtP++++iq+i+++L++yG+ie+kNVfyWFQN+k+Rer k GSBRNA2T00136609001 56 HSRWNPTPEQTMVLEEVYSSGTRTPTTQQIQEIASKLQKYGRIEGKNVFYWFQNHKSRERLK 117 68**********************************************************88 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 11.256 | 52 | 117 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.07E-12 | 53 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 7.0E-5 | 54 | 121 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.7E-18 | 57 | 115 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-8 | 57 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.83E-5 | 58 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 291 aa Download sequence Send to blast |
MGKQKLVSNI YISLGYNKDL TSHSLAHHCN MNDIRNDEQI ITGSAGEPKE REKYMHSRWN 60 PTPEQTMVLE EVYSSGTRTP TTQQIQEIAS KLQKYGRIEG KNVFYWFQNH KSRERLKRRR 120 GDQQGVTTIS NVHEETLRKD NVIVDTANKD SSSVSRRRGD HRVIHTSTCL SPSPTHPQKN 180 SIDDGKREEY KRGLEEEKET TSQNQIHPSN TSDFNYHLIT ASKPSQEEEQ QYKLNDDEEE 240 EEEETRKSRT LDLFPVIENQ EIIGFEEKNT KPNQLYCNYC YYYEFMPLMN * |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00136609001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013709790.1 | 0.0 | WUSCHEL-related homeobox 6-like | ||||
TrEMBL | A0A3P6FL86 | 0.0 | A0A3P6FL86_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g106350.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13369 | 18 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G01500.1 | 4e-47 | WOX family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|