PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00136112001
Common NameGSBRNA2T00136112001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARR-B
Protein Properties Length: 601aa    MW: 67860.2 Da    PI: 5.2505
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00136112001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like74.12e-23230283155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          k ++ Wt +LH+ F++a++++ G +kA+Pk+ile+m+v  Lt+e+v+SHLQkYR 
  GSBRNA2T00136112001 230 KSKITWTDDLHDLFLQAIRHI-GLDKAVPKKILEFMNVSYLTRENVASHLQKYRQ 283
                          6799*****************.********************************5 PP
2Response_reg74.83.3e-25181331109
                          EEEESSSHHHHHHHHHHHHHTTC.....EEEE..EESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTT CS
         Response_reg   1 vlivdDeplvrellrqalekegy.....eeva..eaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahg 81 
                          v++vdD+p+++e++ + lek +y     +e++  +++d++eal +lk ++  +Dli++D  mp+m+Gl+l k+i++e  +lp+iv+++  
  GSBRNA2T00136112001  18 VMVVDDDPVFLEIMSRTLEKLKYrdsstMEITviAVKDSREALSTLKIERnnIDLIVTDYYMPDMNGLQLKKQITQEYGNLPVIVMSSDT 107
                          89*****************666644444333335899*******99555555***********************************777 PP

                          THHHHHHHHHTTESEEEESS--HHHHHH CS
         Response_reg  82 eeedalealkaGakdflsKpfdpeelvk 109
                          +    +e l  Ga++f+ Kp++  el+k
  GSBRNA2T00136112001 108 D--KEHESLTCGAMGFIQKPIKATELTK 133
                          6..7799*****************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23004.7E-2915143No hitNo description
SMARTSM004485.5E-2116135IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521721.99E-2616145IPR011006CheY-like superfamily
PROSITE profilePS5011034.29817139IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.0E-2218133IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.44E-2519133No hitNo description
PROSITE profilePS512949.307227286IPR017930Myb domain
SuperFamilySSF466891.02E-17229287IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-23229287IPR009057Homeodomain-like
TIGRFAMsTIGR015572.8E-26230283IPR006447Myb domain, plants
PfamPF002491.2E-5234282IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MAFAQPFYNQ SSLLRINVMV VDDDPVFLEI MSRTLEKLKY RDSSTMEITV IAVKDSREAL  60
STLKIERNNI DLIVTDYYMP DMNGLQLKKQ ITQEYGNLPV IVMSSDTDKE HESLTCGAMG  120
FIQKPIKATE LTKFYQLALK CKRNGKSTLW TENNHNDTDV SISQQIQFFP EQDNLMMTKK  180
KKFSPRPDSR SMNSSNGTCV STDASRKNKK RKANGGSGDG VESLSQPSMK SKITWTDDLH  240
DLFLQAIRHI GLDKAVPKKI LEFMNVSYLT RENVASHLQK YRQFLRKVAE RSSLCSSNML  300
PSNGIDSIYP YPHTREPYYN NYTSSSSWYG TSLSNNRSFY SNPGHGLGQS RLLSNTSDPV  360
RSNQMPHSYM NRNLNYSPQN VGRRSFLEPT ANKTSQTSQV LGFEQHGLSA INGSGFNNNT  420
LISYGSLTTH QPGSSNFSYG LQSFLNNENT AYEPQPQTHA QAAAQPNIEI PQQENLSLFD  480
DLGNINELLC DISNFELDHN KQQEAVSTTQ FELPANVSTE MNQFFSLEDD DWTFLNTNQG  540
LSNGETSNNV APETNSQTFN MSTNHDQEQD AQDFVDWSFL NPEDLANEYD FMNSLFNGMN  600
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-18230289564ARR10-B
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mainly expressed in siliques. Also found in germinating seedlings, stems, flowers and roots, but not in rosette leaves. {ECO:0000269|PubMed:15173562, ECO:0000269|Ref.3}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00136112001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1891950.0AC189195.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB004B12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009122362.10.0PREDICTED: putative two-component response regulator ARR21
SwissprotQ9LYP50.0ARR21_ARATH; Putative two-component response regulator ARR21
TrEMBLA0A397XT240.0A0A397XT24_BRACM; Uncharacterized protein
STRINGBra009284.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61131737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07210.10.0response regulator 21
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]