PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00135980001
Common NameGSBRNA2T00135980001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CAMTA
Protein Properties Length: 1008aa    MW: 113546 Da    PI: 5.9684
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00135980001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1184.41.2e-57211382118
                 CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahsee 90 
                          l+e ++rwl++ ei++iL n++k+++++e++trp sgsl+L++rk++ryfrkDG++w+kkkdgkt++E+hekLKvg+++vl+cyYah+e 
  GSBRNA2T00135980001  21 LSEaQHRWLRPAEICEILRNYHKFHIATESPTRPASGSLFLFDRKVLRYFRKDGHNWRKKKDGKTIKEAHEKLKVGSIDVLHCYYAHGEG 110
                          45559************************************************************************************* PP

                 CG-1  91 nptfqrrcywlLeeelekivlvhylevk 118
                          n++fqrrcyw+Le el +iv+vhylevk
  GSBRNA2T00135980001 111 NENFQRRCYWMLEVELMHIVFVHYLEVK 138
                          *************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143783.99417143IPR005559CG-1 DNA-binding domain
SMARTSM010767.8E-8420138IPR005559CG-1 DNA-binding domain
PfamPF038594.5E-5023137IPR005559CG-1 DNA-binding domain
SuperFamilySSF812961.14E-13416502IPR014756Immunoglobulin E-set
Gene3DG3DSA:2.60.40.108.7E-4417491IPR013783Immunoglobulin-like fold
PfamPF127969.3E-7598676IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.3E-16599711IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029718.802599681IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.45E-17600710IPR020683Ankyrin repeat-containing domain
CDDcd002047.86E-13605708No hitNo description
PROSITE profilePS5008811.22649681IPR002110Ankyrin repeat
SMARTSM002480.0029649678IPR002110Ankyrin repeat
SuperFamilySSF525406.11E-8825876IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000151.3826848IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.602828856IPR000048IQ motif, EF-hand binding site
PfamPF006120.0012828847IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0029849871IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.322850874IPR000048IQ motif, EF-hand binding site
PfamPF006122.2E-4852871IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 1008 aa     Download sequence    Send to blast
MADRGSFGFI SPPRLDMEQL LSEAQHRWLR PAEICEILRN YHKFHIATES PTRPASGSLF  60
LFDRKVLRYF RKDGHNWRKK KDGKTIKEAH EKLKVGSIDV LHCYYAHGEG NENFQRRCYW  120
MLEVELMHIV FVHYLEVKGS RTSIGMKENN SNSLSGTASV NIDSAASPTS RLSSYCEDAD  180
SGDSHQSSSV LRASPEPQTG NRNGWTSAPG MRTVSQVHGN RVGETDSQRL FDVQTWDAVD  240
NLVTRYDQPC NNLLLEERTD KGGMLPAEHL RSPLQTQLNW QIPAQDDLPL PKWPGYLLPH  300
SGMTDDTDLA LLEQSAQDNF ESFSSLLDIE HLQSDGISPS DMESEYIPVK KSLLRHEDSL  360
KKVDSFSRWA SKELGEMEDL QMQSSRGDIA WTSVDCETAA AGVAFSPSLS EDQRFTILDY  420
WPKCAQTDAD VEVVVIGTFL LSPQEVTICS WSCMFGEVEV PAEILVDGVL CCHAPPHTAG  480
QVPFYVTCSN RFACSELREF DFRSGSTKKI DAAGIYGYST KEASLQMRFE KLLAHRDFVQ  540
EHQIFEDVVE KRRKISKIIL LNEEKENLFP RIYERHSTKQ EPKELVLRQQ FEDELYIWLI  600
HKVTEEGKGP NILDEGGQGV LHFVAALGYD WAIKPILAAG VNINFRDANG WSALHWAAFS  660
GREETVAVLV SLGADAGALT DPSPELPLGK TAADLAYGKE HRGISGFLAE SSLTSYLEKL  720
TMESKENSPA NSGGPKAVQT VSERTAAPMS SGDIPETLSL KDSLTAVRNA TQAADRLHQV  780
FRMQSFQRKQ LSGFDVDDDD EIGISNELAV SFAASKTKNP GQSEIFVHSA ATHIQKKYRG  840
WKKRKEFLLI RQRVVKIQAH VRGHQVRKQY KPIVWSVGLL EKIILRWRRK GTGLRGFKRN  900
AVPKTVEPEP QCPMVPKEDD YDFLEKGRKQ TEARLEKALT RVKSMVQYPE ARDQYRRLLT  960
VVEGFRENEA SSSLSVNNRE EPVNYEDDDL IDIDSLLNDD IFMSTSP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.22500.0seed
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During leaf developlement, expressed in young leaf primordia, hydathodes of young leaf tips, hydathodes of the lobes in maturating leaves and lamina within the minor veins in adult leaves. During flower development, expressed in developing stamens, germinating pollen grains, ovules and developing seeds. {ECO:0000269|PubMed:20383645}.
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, pollen and siliques. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds calmodulin in a calcium-dependent manner in vitro (PubMed:11925432). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance (PubMed:19270186). Involved in freezing tolerance in association with CAMTA2 and CAMTA3. Contributes together with CAMTA2 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved in drought stress responses by regulating several drought-responsive genes (PubMed:23547968). Involved in auxin signaling and responses to abiotic stresses (PubMed:20383645). Activates the expression of the V-PPase proton pump AVP1 in pollen (PubMed:14581622). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:11925432, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:19270186, ECO:0000269|PubMed:20383645, ECO:0000269|PubMed:23547968, ECO:0000269|PubMed:23581962, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00501DAPTransfer from AT5G09410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00135980001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by UVB, wounding, ethylene and methyl jasmonate (PubMed:12218065). Induced by salt stress and heat shock (PubMed:12218065, PubMed:20383645). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:20383645, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4913040.0AF491304.1 Brassica napus calmodulin-binding transcription activator (CAMTA) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009122514.20.0PREDICTED: calmodulin-binding transcription activator 1
SwissprotQ9FY740.0CMTA1_ARATH; Calmodulin-binding transcription activator 1
TrEMBLM4CYT50.0M4CYT5_BRARP; Uncharacterized protein
STRINGBra009382.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40822452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.20.0ethylene induced calmodulin binding protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]