PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00135878001
Common NameGSBRNA2T00135878001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 304aa    MW: 33899.9 Da    PI: 4.5629
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00135878001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.53e-05149186654
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           ++ErrRR+r+N++++ Lr+++              +iL  A+eY+k+L
  GSBRNA2T00135878001 149 LMAERRRRKRLNDRLSMLRSIMDRT-----------SILGDAIEYMKEL 186
                          589*****************99776...........6777777777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.823143193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-10147196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-5149192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-7150201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MDMEWTQISK QESNNHDDNY GDFFPSGRNL EYLCFNNPLQ EDVNNIDHTF SSLMDLISQP  60
PPLLHQPPQP SSSPTPFFSS SFDYPLPETL QDVTESPYYP PLGLSASQEG NNNDNSSPLV  120
EESKSFMSTG ETNKKMRSKK VVGQPSKNLM AERRRRKRLN DRLSMLRSIM DRTSILGDAI  180
EYMKELLDKI NKLQELGSNS DLKDSLTTNQ SMVKNSPKFE VDQREVNTHI DICCSTQPGL  240
LLSTVGTLEI NLGLEIQQCV ISCFSDFSLQ ATCSEVAGNS ECITSEDIKQ ALIKNAGYGG  300
RCS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151158ERRRRKRL
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in leaves and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00135878001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009122040.10.0PREDICTED: transcription factor bHLH61
RefseqXP_013666124.10.0transcription factor bHLH61-like
SwissprotQ9LXA91e-114BH061_ARATH; Transcription factor bHLH61
TrEMBLA0A3P6CNU70.0A0A3P6CNU7_BRACM; Uncharacterized protein
STRINGBra009022.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20432878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10570.11e-108bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]