PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00135820001
Common NameGSBRNA2T00135820001, LOC106369969
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 330aa    MW: 37683.2 Da    PI: 5.2083
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00135820001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM150.48.9e-47191463128
                  NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          pGfrFhPtdeel+++yLk+kvegk++++ +vi+ev+iyk+eP+dL   +++k++++ewyfF++ +k++++++  nratk+gyWk+tg dk
  GSBRNA2T00135820001  19 PGFRFHPTDEELITYYLKRKVEGKPMRF-DVIREVNIYKHEPSDLAelSRLKTKDQEWYFFCPLEKRQNSSTVINRATKEGYWKKTGDDK 107
                          8*************************99.9***************8444899999*********************************** PP

                  NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +++++ ++el+g+ ktLv+++gr+pkg++t+Wv+ eyrl
  GSBRNA2T00135820001 108 KIKREgDDELIGVVKTLVYHRGRSPKGNRTNWVLYEYRL 146
                          ***9977888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-5116164IPR003441NAC domain
PROSITE profilePS5100550.56417164IPR003441NAC domain
PfamPF023657.1E-2619146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MTDPVLPAPV TASGKPIGPG FRFHPTDEEL ITYYLKRKVE GKPMRFDVIR EVNIYKHEPS  60
DLAELSRLKT KDQEWYFFCP LEKRQNSSTV INRATKEGYW KKTGDDKKIK REGDDELIGV  120
VKTLVYHRGR SPKGNRTNWV LYEYRLVQNK LEIDSYVVCR VIRKEHFGPS TECIYAPFSE  180
QDWDDGINEK IQQGKNHIDE DPNTVDQDDN NSEPLTRGCL PLTTLVQYKR KRQLDSFGSY  240
NNSSQTTQDA VSSVAATLEE NEVATMVPTS SSTELIDHLE TEKQEMAVAR ETYNLDLMSA  300
EVMVSILQGQ VDALRAEHEE LKKTNINNG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-36916511166NO APICAL MERISTEM PROTEIN
1ut4_B2e-36916511166NO APICAL MERISTEM PROTEIN
1ut7_A2e-36916511166NO APICAL MERISTEM PROTEIN
1ut7_B2e-36916511166NO APICAL MERISTEM PROTEIN
4dul_A2e-36916511166NAC domain-containing protein 19
4dul_B2e-36916511166NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in floral organs, and, at low levels, in other organs. {ECO:0000269|PubMed:25578968}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC051/NAC052 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). {ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00135820001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013665509.10.0NAC domain-containing protein 53
SwissprotQ9SQX93e-73NAC50_ARATH; NAC domain containing protein 50
TrEMBLA0A3P6DLU50.0A0A3P6DLU5_BRACM; Uncharacterized protein
STRINGBra008980.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2348134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.23e-76NAC domain containing protein 50
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Zhang S, et al.
    C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association.
    Cell Discov, 2019.
    [PMID:26617990]