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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00135091001 | ||||||||
Common Name | GSBRNA2T00135091001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | CAMTA | ||||||||
Protein Properties | Length: 158aa MW: 18291.9 Da PI: 6.3899 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 125.3 | 2.7e-39 | 80 | 156 | 42 | 118 |
CG-1 42 ynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118 + +++ryfrkDG++w+kkkdgktv+E+hekLKvg+++vl+cyYah e+n++fqrrcyw Le+el ++v+v+ylevk GSBRNA2T00135091001 80 HSFQVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHEEDNENFQRRCYWTLEQELMHVVFVQYLEVK 156 55689*********************************************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 48.795 | 39 | 157 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 2.9E-37 | 45 | 156 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 5.5E-32 | 82 | 155 | IPR005559 | CG-1 DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
MATVTLALPH ESETESVMFF MCLFPLIQTP TTNSSMSLLD LKGGLIRCAQ NSKLSDSSLL 60 IRFNDSTDFD ELTEPVSPLH SFQVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSIDVLH 120 CYYAHEEDNE NFQRRCYWTL EQELMHVVFV QYLEVKV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00135091001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493811 | 8e-73 | AB493811.1 Arabidopsis thaliana At5g64220 mRNA for hypothetical protein, partial cds, clone: RAAt5g64220. | |||
GenBank | AK229403 | 8e-73 | AK229403.1 Arabidopsis thaliana mRNA for Calmodulin-binding transcription activator 2, complete cds, clone: RAFL16-66-C08. | |||
GenBank | BT010874 | 8e-73 | BT010874.1 Arabidopsis thaliana At5g64220 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013616703.1 | 3e-52 | PREDICTED: uncharacterized protein LOC106323081 isoform X2 | ||||
TrEMBL | A0A3P6DLM7 | 3e-94 | A0A3P6DLM7_BRAOL; Uncharacterized protein (Fragment) | ||||
STRING | Bo2g057520.1 | 3e-76 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM19280 | 4 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64220.2 | 5e-46 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Publications ? help Back to Top | |||
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