PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00134902001

Common Name

GSBRNA2T00134902001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Dof

Protein Properties

Length: 225aa MW: 23798.2 Da PI: 8.9531

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00134902001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.3	1.4e-37	24	84	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++l+cprC+stntkfCyynny+ sqPr+fCk+CrryWt+GG+lr++PvGg +rk+ k+s GSBRNA2T00134902001 24 QQEQLPCPRCESTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGVSRKSSKRS 84 68999***************************************************98875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-28	2	72	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.3E-33	26	82	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.64	28	82	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	30	66	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MPSDLNDSRR VTTKVPHGGA AAEQQEQLPC PRCESTNTKF CYYNNYNFSQ PRHFCKSCRR 60 YWTHGGTLRD IPVGGVSRKS SKRSRAFSSV AAGSRNFPLQ ATPVPFPPSS YGGGITAAKG 120 NTSSLYGGFT TLLNNNAAAS RHGPGGGFNG PGNGPDGFGL GLGHGSYFEE VRFGQGITVW 180 PFSTGATDAN VADTSHAAPV HATWQLEGLE SKVGFVAGDY LAWD*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00134902001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013659242.2	1e-166	dof zinc finger protein DOF5.8-like
Swissprot	Q9FGD6	1e-108	DOF58_ARATH; Dof zinc finger protein DOF5.8
TrEMBL	A0A0D3E2K0	1e-140	A0A0D3E2K0_BRAOL; Uncharacterized protein
STRING	Bo9g020500.1	1e-141	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2286	28	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66940.1	2e-88	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]