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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00134741001 | ||||||||
Common Name | GSBRNA2T00134741001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 404aa MW: 44270.4 Da PI: 7.4709 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.6 | 8.3e-20 | 196 | 245 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrd + + +r++lg+f+ ae Aa+a+++a+++++g GSBRNA2T00134741001 196 RYRGVRQRP-WGKWAAEIRDpF-----KaARVWLGTFDNAESAARAYDEAALRFRG 245 7********.**********66.....56*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 8.4E-36 | 196 | 259 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.62E-22 | 196 | 254 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 25.106 | 196 | 253 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.98E-33 | 196 | 255 | No hit | No description |
Pfam | PF00847 | 3.1E-13 | 196 | 245 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.9E-32 | 196 | 254 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.4E-11 | 197 | 208 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.4E-11 | 219 | 235 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006970 | Biological Process | response to osmotic stress | ||||
GO:0009749 | Biological Process | response to glucose | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 404 aa Download sequence Send to blast |
MIKRNRENPG DGREDDGENC VCALKVANQE DNVGKKAEPT TREDDDHRTL SDIDQWLYSF 60 SAEDDHLHRH NSLTPPSSSL SISREKEMSA IVSALTHVVA GNVPTRQYGG EGTSNSSSSP 120 GQKRRREVEE GGGGGKDVKA ANTLTVDQYF SGGSSSSKVG EASSNMSGSV PTYEYTTTPN 180 VNTETLLLSG DGPQRRYRGV RQRPWGKWAA EIRDPFKAAR VWLGTFDNAE SAARAYDEAA 240 LRFRGNKAKL NFPENVKLVR PASIAPTLSV HQTTVQRPTQ LRNSGSTSTL LPVRHASDQN 300 VHSQLLMQSY NFSHLELAHH QQQFQHQQQS LYDQVSFPLR FGHTGGSTMQ PTSTSSSRST 360 SMFSPAEVQP KLESASETDR LQDLQSLGKA SNNNNNYNNS PSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-22 | 195 | 256 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous with lower levels in seeds and siliques. {ECO:0000269|PubMed:16227468}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Negative regulator of the abscisic acid (ABA) signaling pathway involved in seed germination and in responses to stress conditions. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16227468}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00584 | DAP | Transfer from AT5G64750 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00134741001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and stresses, including cold, drought and salt (PubMed:16227468, PubMed:26961720). Triggered by YY1 (PubMed:26961720). {ECO:0000269|PubMed:16227468, ECO:0000269|PubMed:26961720}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ713825 | 0.0 | JQ713825.1 Brassica juncea ethylene-responsive transcription factor ABR1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013699566.1 | 0.0 | ethylene-responsive transcription factor ABR1-like | ||||
Swissprot | Q9FGF8 | 1e-146 | ABR1_ARATH; Ethylene-responsive transcription factor ABR1 | ||||
TrEMBL | A0A3P6DMN0 | 0.0 | A0A3P6DMN0_BRAOL; Uncharacterized protein (Fragment) | ||||
STRING | Bo9g018330.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9118 | 21 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64750.1 | 1e-111 | ERF family protein |