PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00134618001 | ||||||||
Common Name | GSBRNA2T00134618001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | EIL | ||||||||
Protein Properties | Length: 193aa MW: 22165.4 Da PI: 9.0581 | ||||||||
Description | EIL family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | EIN3 | 156.5 | 3.2e-48 | 24 | 138 | 1 | 115 |
XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasds 90 ++lk+rmwkd++l+++lk++k+q+ ++ ++ +++ e++rrkkm+r+QD++LkYM+k+mevc+a+GfvYgi+pekgkp +g+sds GSBRNA2T00134618001 24 DDLKRRMWKDRNLMEKLKQQKRQSN---DV-VSL--ASHRAEASRRKKMARSQDSVLKYMMKIMEVCKAKGFVYGIVPEKGKPITGSSDS 107 79********************964...44.333..4589************************************************** PP XXXXXXXXXXXXXXXXXXXXXX......XXX CS EIN3 91 LraWWkekvefdrngpaaisky......qak 115 Lr+WWke v+fd+++p+a+s+y +a+ GSBRNA2T00134618001 108 LRRWWKETVQFDQTAPNAVSDYitlavaAAA 138 **********************765544344 PP | |||||||
2 | EIN3 | 38.4 | 2.7e-12 | 144 | 182 | 219 | 257 |
GGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S CS EIN3 219 ptieeirelerqskylqdkmsakesfallsvlnqeekec 257 + + ++r+l+rqsk+lqdkm+ake++++++vlnqee+++ GSBRNA2T00134618001 144 EPSRRVRRLARQSKCLQDKMMAKETDTWSRVLNQEEALL 182 56789*******************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04873 | 6.8E-47 | 24 | 133 | No hit | No description |
Gene3D | G3DSA:1.10.3180.10 | 1.3E-12 | 60 | 183 | IPR023278 | Ethylene insensitive 3-like protein, DNA-binding domain |
SuperFamily | SSF116768 | 2.35E-9 | 71 | 182 | IPR023278 | Ethylene insensitive 3-like protein, DNA-binding domain |
Pfam | PF04873 | 8.9E-8 | 147 | 179 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MVGVEELEPL SPAEEEGEED ISYDDLKRRM WKDRNLMEKL KQQKRQSNDV VSLASHRAEA 60 SRRKKMARSQ DSVLKYMMKI MEVCKAKGFV YGIVPEKGKP ITGSSDSLRR WWKETVQFDQ 120 TAPNAVSDYI TLAVAAAAEL IEKEPSRRVR RLARQSKCLQ DKMMAKETDT WSRVLNQEEA 180 LLNIKDLKIS ED* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00134618001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC155342 | 0.0 | AC155342.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH052O08, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013738687.1 | 7e-89 | putative ETHYLENE INSENSITIVE 3-like 4 protein | ||||
Swissprot | Q9LX16 | 1e-74 | EIL4_ARATH; Putative ETHYLENE INSENSITIVE 3-like 4 protein | ||||
TrEMBL | M4CPB2 | 1e-116 | M4CPB2_BRARP; Uncharacterized protein | ||||
STRING | Bra006050.1-P | 1e-116 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16143 | 4 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10120.1 | 2e-68 | EIL family protein |
Publications ? help Back to Top | |||
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