PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00134308001

Common Name

GSBRNA2T00134308001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB_related

Protein Properties

Length: 547aa MW: 61116 Da PI: 9.7431

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00134308001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.4	1.4e-07	442	490	2	47
SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 ++WT+ E++++ +vk+ + Wk ++ ++ +R++k+++s+++++ GSBRNA2T00134308001 442 KSWTAKEEQKFESLVKKIPLSscdgFWKYASKAFP-RRSEKDLISYYYNV 490 58***************99**********.**********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00433	2.7E-5	5	355	IPR001241	DNA topoisomerase, type IIA
Gene3D	G3DSA:3.30.230.10	3.0E-46	39	207	IPR014721	Ribosomal protein S5 domain 2-type fold, subgroup
CDD	cd00822	3.65E-52	39	208	No hit	No description
PRINTS	PR01159	8.9E-10	39	61	IPR000565	DNA topoisomerase, type IIA, subunit B
Pfam	PF00204	5.6E-43	41	207	IPR013506	DNA topoisomerase, type IIA, subunit B, domain 2
SuperFamily	SSF54211	5.5E-37	44	207	IPR020568	Ribosomal protein S5 domain 2-type fold
PRINTS	PR01159	8.9E-10	129	145	IPR000565	DNA topoisomerase, type IIA, subunit B
PRINTS	PR01159	8.9E-10	177	191	IPR000565	DNA topoisomerase, type IIA, subunit B
PRINTS	PR01159	8.9E-10	191	211	IPR000565	DNA topoisomerase, type IIA, subunit B
SMART	SM00717	0.0088	440	493	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.26E-6	441	498	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.5E-4	443	490	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.086	443	491	IPR017877	Myb-like domain
CDD	cd00167	7.70E-5	443	491	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006265	Biological Process	DNA topological change
GO:0003677	Molecular Function	DNA binding
GO:0003918	Molecular Function	DNA topoisomerase type II (ATP-hydrolyzing) activity
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 547 aa Download sequence Send to blast
MSCGAVRKVT RQDIKVVKAS MEKEDNDDNL YKDCVKGGGG ASVYITWLIG DKRPLHDVMG 60 FKKEINDIKI DIALQWYVDV YSDTVLGYAN GIHTVDGGTH IDGAKASITR TINTLGKKRK 120 FVKDLDLSGE HIREGLTCIV AVVVTKPEFV DQTKKKLGNP KIREIVDKSV QEYLTEYFEL 180 HPDVFESIYT KSFKAYQKAL ALKRARKVIL TPRTIPQNLT NSSSGKFEIF IAIGESSGGA 240 AKHGDNDRRF QSKRTLEQPL SNGAAVSTAP PGRSLENTID SRVDKKRQKV VPSSQHPSSS 300 SRQTVAAASN RPNRKDVGAK TLKGVSTGSN KTKPVIPVGP GFQAEIPIWI ASTKKGKFYG 360 SPGDSDTLRW IGTAVWPTYS LKKKDHHKKV GEGRPDSCSC ANPGSVDCAK LHIKEARELL 420 EKETDGAFYT WKFDEMGEVG SKSWTAKEEQ KFESLVKKIP LSSCDGFWKY ASKAFPRRSE 480 KDLISYYYNV FLNHRNTDDD HYGDFNHRNT DDDHYGDFLA DHRHARRRRG AITSMHYENL 540 RIDETA*

Sequence ? help Back to Top

Protein Sequence Length: 547 aa Download sequence Send to blast

MSCGAVRKVT RQDIKVVKAS MEKEDNDDNL YKDCVKGGGG ASVYITWLIG DKRPLHDVMG  60
FKKEINDIKI DIALQWYVDV YSDTVLGYAN GIHTVDGGTH IDGAKASITR TINTLGKKRK  120
FVKDLDLSGE HIREGLTCIV AVVVTKPEFV DQTKKKLGNP KIREIVDKSV QEYLTEYFEL  180
HPDVFESIYT KSFKAYQKAL ALKRARKVIL TPRTIPQNLT NSSSGKFEIF IAIGESSGGA  240
AKHGDNDRRF QSKRTLEQPL SNGAAVSTAP PGRSLENTID SRVDKKRQKV VPSSQHPSSS  300
SRQTVAAASN RPNRKDVGAK TLKGVSTGSN KTKPVIPVGP GFQAEIPIWI ASTKKGKFYG  360
SPGDSDTLRW IGTAVWPTYS LKKKDHHKKV GEGRPDSCSC ANPGSVDCAK LHIKEARELL  420
EKETDGAFYT WKFDEMGEVG SKSWTAKEEQ KFESLVKKIP LSSCDGFWKY ASKAFPRRSE  480
KDLISYYYNV FLNHRNTDDD HYGDFNHRNT DDDHYGDFLA DHRHARRRRG AITSMHYENL  540
RIDETA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6gau_A	1e-28	39	278	256	501	DNA gyrase subunit B,DNA gyrase subunit A
6gau_B	1e-28	39	278	256	501	DNA gyrase subunit B,DNA gyrase subunit A
6gav_A	1e-28	39	278	256	501	DNA gyrase subunit B,DNA gyrase subunit A
6gav_B	1e-28	39	278	256	501	DNA gyrase subunit B,DNA gyrase subunit A
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00134308001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022554189.1	0.0	uncharacterized protein LOC111198197 isoform X1
Refseq	XP_022554190.1	0.0	uncharacterized protein LOC111198197 isoform X2
Refseq	XP_022554191.1	0.0	uncharacterized protein LOC111198197 isoform X2
TrEMBL	A0A3P6AJ00	0.0	A0A3P6AJ00_BRAOL; DNA topoisomerase 2
STRING	Bo3g002620.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11639	4	5

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]