PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00133586001 | ||||||||
Common Name | GSBRNA2T00133586001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | TALE | ||||||||
Protein Properties | Length: 445aa MW: 48907.8 Da PI: 5.0141 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 22.5 | 2e-07 | 382 | 414 | 22 | 54 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +yp++e++++L +++gL+ +q+ +WF N+R + GSBRNA2T00133586001 382 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 414 58*****************************87 PP | |||||||
2 | ELK | 29.9 | 1.2e-10 | 335 | 356 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++++++++E++ GSBRNA2T00133586001 335 ELKHELKQGYKEKIVDIREEIM 356 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 4.8E-19 | 169 | 213 | IPR005540 | KNOX1 |
Pfam | PF03790 | 4.4E-17 | 172 | 212 | IPR005540 | KNOX1 |
SMART | SM01256 | 9.9E-29 | 226 | 281 | IPR005541 | KNOX2 |
Pfam | PF03791 | 5.5E-21 | 231 | 280 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 9.969 | 335 | 355 | IPR005539 | ELK domain |
Pfam | PF03789 | 4.1E-7 | 335 | 356 | IPR005539 | ELK domain |
SMART | SM01188 | 1.8E-4 | 335 | 356 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.677 | 355 | 418 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.13E-16 | 357 | 421 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.5E-10 | 357 | 422 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.19E-11 | 358 | 419 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-24 | 362 | 419 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.3E-17 | 375 | 414 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 445 aa Download sequence Send to blast |
MSAVSEGPAA EGCWTVWLEG EWGEDSVERT ETLVRLRRLE EVVGERMGNS SKERVGSGSG 60 GSGGMRFLLS PVEEDDGGEA EARRLKSHGF LCGLIIETYE TIVIRSRDSP SPPLSLSLSL 120 SLSLSNNNAA VVGDVIDDVT GGGAEQMMSG GENKNDGGGG EGVVSWQNAR HKSEILSHPL 180 YEQLLSAHVA CLRIATPVDQ LPRIDAQLAQ SQHVVAKYST LCGGGQGLVG GDDKELDQFM 240 THYVLLLCSF KEQLQQHVRV HAMEAVMACW EIEQSLQSLT GVSPGEGMGA TMSDDEDEQV 300 ESDANMFDGG LDVLGFGPLI PTESERSLME RVRQELKHEL KQGYKEKIVD IREEIMRKRR 360 AGKLPGDTTS VLKGWWQSHS KWPYPTEEDK ARLVQETGLQ LKQINNWFIN QRKRNWHSNP 420 SSSTVLKNKR KSNAGDNSGR ERFT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x2n_A | 1e-12 | 358 | 422 | 8 | 72 | Homeobox protein PKNOX1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.23058 | 1e-155 | leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00133586001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352966 | 0.0 | AK352966.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-12-H10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013598002.1 | 0.0 | PREDICTED: homeobox protein knotted-1-like 3 | ||||
Refseq | XP_013706486.1 | 0.0 | homeobox protein knotted-1-like 3 isoform X1 | ||||
Swissprot | P48000 | 0.0 | KNAT3_ARATH; Homeobox protein knotted-1-like 3 | ||||
TrEMBL | A0A0D3DCW5 | 0.0 | A0A0D3DCW5_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6ESQ1 | 0.0 | A0A3P6ESQ1_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g096160.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM444 | 28 | 158 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25220.1 | 0.0 | KNOTTED1-like homeobox gene 3 |
Publications ? help Back to Top | |||
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