|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
GSBRNA2T00133140001 |
Common Name | GSBRNA2T00133140001, LOC106418682 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
Family |
AP2 |
Protein Properties |
Length: 455aa MW: 49632.3 Da PI: 7.9891 |
Description |
AP2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GSBRNA2T00133140001 | genome | Genoscope | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 53.3 | 6.8e-17 | 135 | 184 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g
GSBRNA2T00133140001 135 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAVKFRG 184
78*******************......55***********************9997 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 455 aa
Download sequence Send
to blast |
MLDLNLDVDS KEVSGAVLNQ MDESVTSNSS LVNAEASSCI DGEEELCSTP AVKFQFEILK 60 GGGREDEEGR SEVMTKEFFP IEKGASFGDS SGQSSRSSVD ISFQRGNQGR DAARVMQPPA 120 QPVKKSRRGP RSKSSQYRGV TFYRRTGRWE SHIWDCGKQV YLGGFDTAHA AARAYDRAAV 180 KFRGLEADIN FVISDYEEDL KQMANLAKEE VVQVLRRQSS GFSRNNSRYQ GANLPKIGGW 240 GGAQMEQLNG NMAYDKAIAT KWNGREAASL IEPHAPRIIP AAANAKLDLN LGISLSLGDS 300 PKQNLNNVVC GRNSKMENHM AASTCDTPFN FLKRGSDHLI NRHVHPSAFF SPMERTPKEG 360 FMPRSPQSFP ARTWQPQDQP SGGTATTATA TPLLSNAASS GFSHSATHPP SSSTATLHPS 420 LPFLNLNMPG LYVIHPSEYA SHHHHDINRS QPPP*
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
Regulation -- Description ? help
Back to Top |
Source |
Description |
UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AK352946 | 0.0 | AK352946.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-B14. |