PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00133139001
Common NameGSBRNA2T00133139001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 221aa    MW: 24745.7 Da    PI: 9.6321
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00133139001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.72.9e-1516106194
                          EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                          ffkv +p+d++    l +p +f  ++  + +   +k +t+++ +g +W++kl+  ++ ++++ + +GWk+ vk+ +Lk g+f+ F++dg+
  GSBRNA2T00133139001  16 FFKVYLPNDSGD--DLEIPVSFN-SClpS-S--VPKSVTVTNINGHVWKLKLKKlSGDPEKFSMVDGWKRIVKDEDLKGGEFLAFEFDGS 99 
                          889997766665..59******8.66543.3..45569999***********666888888*************************9997 PP

                          SEE..EE CS
                   B3  88 sefelvv 94 
                          + f+++v
  GSBRNA2T00133139001 100 RLFNFCV 106
                          7775554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.16E-189108IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.3E-179108IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.11114110IPR003340B3 DNA binding domain
CDDcd100176.08E-1514107No hitNo description
SMARTSM010192.5E-1316110IPR003340B3 DNA binding domain
PfamPF023624.7E-1316106IPR003340B3 DNA binding domain
SuperFamilySSF1019364.51E-11116213IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-7116217IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MKKVSGDSSD GRLPKFFKVY LPNDSGDDLE IPVSFNSCLP SSVPKSVTVT NINGHVWKLK  60
LKKLSGDPEK FSMVDGWKRI VKDEDLKGGE FLAFEFDGSR LFNFCVYGQA TQLLDDPDSP  120
SFTVILNPKK KSQLLIPSHI MKDYNLHFTE RITIVDPLVP KFGTLERKIK LQDNGCLFVK  180
GFGSVFRRNN VKTTDTIICE VKKNGNDVAH ILKVHIVRGL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A1e-1361091101At1g16640
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.61731e-178seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00133139001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006400878.11e-75B3 domain-containing protein At5g60130
SwissprotQ9LST32e-46Y5142_ARATH; B3 domain-containing protein At5g60142
TrEMBLM4CE781e-154M4CE78_BRARP; Uncharacterized protein
STRINGBra002509.1-P1e-154(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49471843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60142.11e-48B3 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]