PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00133045001
Common NameGSBRNA2T00133045001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 457aa    MW: 48677 Da    PI: 8.7665
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00133045001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.49e-125578427
                         ---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                         + C +++rtG C yG+rC+F+H+p
  GSBRNA2T00133045001 55 PDCAYYMRTGVCGYGSRCRFNHPP 78
                         78********************97 PP
2zf-CCCH38.71.7e-12101123527
                          --SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                          +C+f+++tGtCk+G++CkF+H++
  GSBRNA2T00133045001 101 PCQFYLKTGTCKFGASCKFNHPR 123
                          7********************96 PP
3zf-CCCH33.57.3e-11146170226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          ++ +C++f++tG+Ck+G +CkF+H+
  GSBRNA2T00133045001 146 GENECSYFLKTGQCKFGITCKFHHP 170
                          5679********************8 PP
4zf-CCCH37.83.1e-12289315127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +++++C+++++tG Ck+G +CkF+H++
  GSBRNA2T00133045001 289 PGEPECQYYLKTGDCKFGTSCKFHHPR 315
                          5799*********************96 PP
5zf-CCCH33.57e-11336360226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          +  +C+f+ ++G+Ck+G++CkF H+
  GSBRNA2T00133045001 336 GVQRCSFYVQNGFCKFGSTCKFDHP 360
                          6779********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.7795179IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-55178IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-65579IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-95578IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-55777IPR000571Zinc finger, CCCH-type
SMARTSM003566.6E-596123IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.13196124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-698124IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-10101123IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-5101123IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.864144172IPR000571Zinc finger, CCCH-type
SMARTSM003565.8E-5144171IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-8146170IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-5147172IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5288315IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.356288316IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-9290315IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-6293318IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-5294316IPR000571Zinc finger, CCCH-type
SMARTSM003569.7E-6334361IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.098334362IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-8336360IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-6336365IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.2E-5340360IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MDMYGRTPPT AMNGSHAPPQ WTPGDADTGL LLQAESSMWR LGLGSETYPQ RAGAPDCAYY  60
MRTGVCGYGS RCRFNHPPDR ASVEATVRAT GQYPERMGAL PCQFYLKTGT CKFGASCKFN  120
HPRNAAAGGS MTHVPLNIYG YPVRQGENEC SYFLKTGQCK FGITCKFHHP HPASASASAS  180
AAATLPPPAS APQFYSSVQH HSLMPGPPSS SLRPLLPGSY MQGAYGPMLL TTPGVLPIQA  240
WNPYSAPVSP ALSPGAASLY GVTQLSSTTP GVYPSGVVTL KEESFPERPG EPECQYYLKT  300
GDCKFGTSCK FHHPRDRVPP RPNCDLSSIG LPLRPGVQRC SFYVQNGFCK FGSTCKFDHP  360
VGTIRYNPSA SSLADAPVAP YPVTSLLASS SSSSAELIPG DPYLGASSRS TSNNISAGLI  420
FSQSGVSLPP FTDLQTSLSL SGSRITRQGR EIRRSF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.64970.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00133045001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896340.0AC189634.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS004I08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009142498.10.0PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X1
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A3P5ZAS40.0A0A3P5ZAS4_BRACM; Uncharacterized protein
STRINGBra004427.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59122647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.30.0C3H family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]