PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00132880001
Common NameGSBRNA2T00132880001, LOC106454431
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 270aa    MW: 29992.9 Da    PI: 7.8744
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00132880001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.7e-1880129255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+++AeIrdps+   r+r++lg+f+taeeAa  +++a+ +++g
  GSBRNA2T00132880001  80 KYRGVRRRP-WGKYAAEIRDPSK---RARVWLGTFDTAEEAAIGYDKAAIRIKG 129
                          8********.**********975...5***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.0E-2880135IPR001471AP2/ERF domain
CDDcd000183.71E-3080135No hitNo description
SMARTSM003801.9E-3380145IPR001471AP2/ERF domain
PfamPF008471.2E-1180129IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-2080136IPR016177DNA-binding domain
PROSITE profilePS5103222.16880137IPR001471AP2/ERF domain
PRINTSPR003671.5E-108192IPR001471AP2/ERF domain
PRINTSPR003671.5E-10103119IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MKSRERNVKY TVHRKLTSLS PKVVKITVTD PCATDSSSDE ENDDRFVSPA KRVKRYVEVI  60
RFCDAAKRKK PTNKAAEPVK YRGVRRRPWG KYAAEIRDPS KRARVWLGTF DTAEEAAIGY  120
DKAAIRIKGR HALTNILTPP SSPPAIDLET VSRCDDSAVE ESQSSSIMRS PTSVLRFSAG  180
PINLSSAHQE APAGLASPDP FFLPPELFPA RDCFWDSEIA PDPLFLDEFQ LLPNSSTVSK  240
LSESFPLGVI GDLSSCSWDV DEFFKDHLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2181135661ATERF1
3gcc_A4e-2181135661ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00132880001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009142662.10.0PREDICTED: ethylene-responsive transcription factor CRF5
RefseqXP_013752005.10.0ethylene-responsive transcription factor CRF5
SwissprotO823393e-98CRF5_ARATH; Ethylene-responsive transcription factor CRF5
TrEMBLM4CK140.0M4CK14_BRARP; Uncharacterized protein
STRINGBra004548.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25782571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46310.17e-95cytokinin response factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Striberny B, et al.
    Cytokinin Response Factor 5 has transcriptional activity governed by its C-terminal domain.
    Plant Signal Behav, 2017. 12(2): p. e1276684
    [PMID:28045578]