PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00132777001
Common NameGSBRNA2T00132777001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family AP2
Protein Properties Length: 432aa    MW: 48024.8 Da    PI: 9.2562
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00132777001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.51.7e-13100153755
                  AP2   7 rwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          ++++++gr++A+++d  ++n+   k+ k+++lg ++ +e Aa+a++ a++k++g
  GSBRNA2T00132777001 100 YRHRWTGRYEAHLWDkTTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 153
                          79*************777744468557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103217.80788161IPR001471AP2/ERF domain
SMARTSM003805.1E-1899167IPR001471AP2/ERF domain
PfamPF008473.1E-9100153IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-13100162IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-12101162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MASSDQGPKT EAGGGGESSE TVAAASDEML LYRGFKKAKK ERGCTAKERI SKMPPCTAGK  60
RSSIYRGVTR FRNDFKFRFL IIGYSNRRYA DVSLYLVLSY RHRWTGRYEA HLWDKTTWNQ  120
NQNKKGKQVY LGAYDDEEAA ARAYDLAALK YWGPGTLINF PVTDYSRDLE EMQNLSREEY  180
LASLRRKSSG FSRGIAKYRG LQSRWDASAS RMPGPEYFSN MHYGAGDERG TEGDFLGNFC  240
LERKIDLTGY IKWWGVNKPR QPESSSSKAS EDAKVEDAGT ELKTLEHTSH ATEPYKAPNL  300
GVLQRKEKQI SSSALSILSA SPAYKSLEEK VLKIQESSSS ARENDENANQ KPVVSLGSGG  360
VVPSGALSLQ KSMYPLTSLL TSPLLTNYNT LDPLGDPILW TPFLPPGSSH TSEVTKTETS  420
CSTYSYLPQE K*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00132777001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3535340.0AK353534.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-50-D01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009142768.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710 isoform X2
SwissprotQ8GWK20.0AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A3P5Z5W90.0A0A3P5Z5W9_BRACM; Uncharacterized protein
STRINGBra004641.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108152433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.30.0AP2 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]