PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00132736001

Common Name

GSBRNA2T00132736001, LOC106450630

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 328aa MW: 36809.1 Da PI: 7.2219

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00132736001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.9	1.5e-12	259	304	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L+el+P+ +k + +++L +Av+YIk+Lq GSBRNA2T00132736001 259 SIAERVRRTKISERMRKLQELVPNM----DKQTNTSDMLDLAVDYIKDLQ 304 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.913	253	303	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.96E-15	256	315	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.47E-11	257	306	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.1E-13	258	314	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.2E-12	259	309	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.9E-9	259	304	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MDSNTQNHLY DPNHVSSSSG SGLLRFRSAP SSVLAAFVDD NDKTVFNSNE FENKSRVSYA 60 AAPPPQQEPS SFLGLPPHYP KQSNGMMMMN TIGLDQFLSM NNHHTRPVES HLLRQSSSPA 120 GMFTNEQNGY GSMRSYVGEE EEEEESPSHP NGLRRHSSLS SRPPSSLGML SQIPEIDSES 180 VQYSHWNHPS TSFIDNLSSL KRETEDDGKL FHGAQIMSHH LSLPKSASDM GSVDKYLQLQ 240 DSVPCKVRAK RGCATHPRSI AERVRRTKIS ERMRKLQELV PNMDKQTNTS DMLDLAVDYI 300 KDLQRQYKIL NENRANCKCV NKEKNLI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00132736001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC155337	1e-176	AC155337.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH117N09, complete sequence.
GenBank	AC189220	1e-176	AC189220.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010H06, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013747782.1	0.0	transcription factor bHLH130
Swissprot	Q66GR3	1e-165	BH130_ARATH; Transcription factor bHLH130
TrEMBL	M4CKE3	0.0	M4CKE3_BRARP; Uncharacterized protein
STRING	Bra004678.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6293	27	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	1e-145	bHLH family protein

Link Out ? help Back to Top
Entrez Gene	106450630

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]