PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00131912001 | ||||||||
Common Name | GSBRNA2T00131912001, LOC106381007 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | DBB | ||||||||
Protein Properties | Length: 289aa MW: 31209.5 Da PI: 5.942 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 17.4 | 9.3e-06 | 4 | 47 | 5 | 42 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ +e e+ C ++ lC C ++ H H++vpl GSBRNA2T00131912001 4 QCNVCETAEAAVLCCADEAALCLACDEKVHAAnklagkHQRVPL 47 7******99*********************66899999999986 PP | |||||||
2 | zf-B_box | 25.8 | 2.2e-08 | 53 | 90 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg...H 37 +++kC+ ++e +fC +++ llC++C +++H H GSBRNA2T00131912001 53 SKPKCDICQEATGFFFCLQDRALLCRKCDVSIH-TvnpH 90 679*******9999******************9.33452 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.196 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.35E-7 | 3 | 47 | No hit | No description |
SMART | SM00336 | 1.8E-8 | 4 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 7.5E-15 | 52 | 99 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.788 | 52 | 99 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.2E-6 | 53 | 89 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.10E-9 | 55 | 99 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 289 aa Download sequence Send to blast |
MKIQCNVCET AEAAVLCCAD EAALCLACDE KVHAANKLAG KHQRVPLSVS SSSKPKCDIC 60 QEATGFFFCL QDRALLCRKC DVSIHTVNPH VSAHQRFLLT GIRVGLESTT DTGPSTPSND 120 DKTNERKPPT SEPQKMDFDD HNHQVGLPET KVSDHISTKL PIASSGSAAT GSIPQWQIDE 180 IFGLTDFDQS YEYMENNGSS KADTSRRGDS DNSSMMRSGE EDGEDNSNCL GGGETSWAVP 240 QIQSPPTASG LNWPRHSNHH SMFVPDISSS ALNTGSSPNQ RVGKRRRS* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Bna.19087 | 0.0 | seed |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Acts as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00131912001 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By light. {ECO:0000269|PubMed:18182030}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK352634 | 0.0 | AK352634.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-06-M18. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013589962.1 | 0.0 | PREDICTED: B-box zinc finger protein 22-like | ||||
Refseq | XP_013676324.1 | 0.0 | B-box zinc finger protein 22 | ||||
Swissprot | Q9SYM2 | 1e-157 | BBX22_ARATH; B-box zinc finger protein 22 | ||||
TrEMBL | A0A0D3CVZ0 | 0.0 | A0A0D3CVZ0_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g081560.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5606 | 28 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G78600.1 | 1e-133 | light-regulated zinc finger protein 1 |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 106381007 |
Publications ? help Back to Top | |||
---|---|---|---|
|