PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00131455001
Common NameGSBRNA2T00131455001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 733aa    MW: 83193.7 Da    PI: 5.4519
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00131455001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.8e-16441485146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          r  WT+eEd +l  av ++G ++W ++a++m  gRt+ qc +rw+k
  GSBRNA2T00131455001 441 RREWTPEEDNQLRAAVSLFGEKDWQSVANEMD-GRTGTQCSNRWNK 485
                          678*****************************.************8 PP
2Myb_DNA-binding41.53.2e-13493537146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          r +W+ eEd++l  a + +G ++ ++Ia+ ++ gRt  qc+ rw +
  GSBRNA2T00131455001 493 RAKWSSEEDKRLRVALTFFGAKNYNKIAQFVP-GRTQSQCRARWKD 537
                          569*****************************.***********75 PP
3Myb_DNA-binding34.35.5e-11546589246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          g+WT+eE  +  +avk++G  +W+++a+++   Rt kqc  rw +
  GSBRNA2T00131455001 546 GSWTEEEVTKYNEAVKEHGDSNWSKVASHVY-SRTSKQCSRRWET 589
                          78****************************9.***********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0071733293384IPR001005SANT/Myb domain
PROSITE profilePS500904.67294382IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.0E-5296312IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-5358394IPR009057Homeodomain-like
SuperFamilySSF466891.16E-10366432IPR009057Homeodomain-like
PROSITE profilePS500907.7383435IPR017877Myb-like domain
SMARTSM007170.0066387437IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-10395449IPR009057Homeodomain-like
SuperFamilySSF466891.73E-19420486IPR009057Homeodomain-like
PROSITE profilePS5129422.89436491IPR017930Myb domain
SMARTSM007178.4E-15440489IPR001005SANT/Myb domain
CDDcd001677.07E-13443487No hitNo description
PfamPF139213.7E-15444504No hitNo description
Gene3DG3DSA:1.10.10.604.9E-20450499IPR009057Homeodomain-like
SMARTSM007172.1E-11492541IPR001005SANT/Myb domain
PROSITE profilePS5129411.357492539IPR017930Myb domain
CDDcd001672.39E-9495536No hitNo description
Gene3DG3DSA:1.10.10.608.8E-18500546IPR009057Homeodomain-like
SuperFamilySSF466894.12E-20519592IPR009057Homeodomain-like
PROSITE profilePS5129416.892540595IPR017930Myb domain
SMARTSM007171.1E-9544593IPR001005SANT/Myb domain
PfamPF002492.3E-10546590IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-14547595IPR009057Homeodomain-like
CDDcd001675.95E-10547590No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 733 aa     Download sequence    Send to blast
MDRESMCDSD DDDDIGEDLE ELRRACIVSD SNSGRGLPSD SENEDDFDML RRIKTQLASS  60
PDHPMGLSSL PSDSDNEDDF EMLRSLKRQL ALPVDQEDED DETLLAICKR FSSYENSGVE  120
GNVSNESSRK QVHASCNEPS SEILSRSNTC ESFSEDIEAG NTSVEPPLTL ASSTFPESAQ  180
AFVDAIRKNR SYQKFLRSKL GEIEATIEKN EKLQKDVKII DCFAVSCKRR MKQQAFSQGK  240
DPRFELISIR RPRTHDSSEG TGEKTSPLTL GPLENPCVAS YRVALEEYPV SVCRTNWSAK  300
ENEDLAKGLK QQLQETVIRE ATERSSDLEG CSDDIDTILE SVSNLEITPE MIRQFLLKVN  360
WDQLDIKNRS AAECEARWMS SEDPLINQGP WTAAEDDYIR LVTQNKSVTE WLDVAVSLGT  420
NRTPFQCLAR YQRSLNTDIL RREWTPEEDN QLRAAVSLFG EKDWQSVANE MDGRTGTQCS  480
NRWNKSLVPS RKRAKWSSEE DKRLRVALTF FGAKNYNKIA QFVPGRTQSQ CRARWKDSLD  540
PRLNFGSWTE EEVTKYNEAV KEHGDSNWSK VASHVYSRTS KQCSRRWETL NPHLKLLKKE  600
ALRLRREATI GNFVDRESER PLLVASDFLA LAERSFEPEP ALKKKRKARF SEAVCDDTER  660
QPKRRRKGLE RCSGDGKEKK QRRKRKAVAG TSSSDNSTVT TNCSQVNVGI EKLKPRRKVS  720
AVVPIENQDA LN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C9e-243665896155MYB PROTO-ONCOGENE PROTEIN
1h89_C9e-243665896155MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1664685RRKGLERCSGDGKEKKQRRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00131455001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022566144.10.0snRNA-activating protein complex subunit 4-like
TrEMBLA0A3P5ZJT70.0A0A3P5ZJT7_BRACM; Uncharacterized protein
STRINGBra013415.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65042744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.10.0myb domain protein 4r1
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]