PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00131447001
Common NameGSBRNA2T00131447001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 304aa    MW: 35434.3 Da    PI: 10.5367
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00131447001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind59.96.9e-19495299
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHH.HHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX.XXXXXX CS
         HSF_DNA-bind  2 Flkklyeiledeelkeliswsengnsfvvldeee.fakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks.Fkkgkk 91
                         F   +yei++d++l+++isws++++sf++++++e f+kk+L+++F   n++ F+  L++YgF +++ ++++        eF hk+ F +gk 
  GSBRNA2T00131447001  4 FHVAIYEIVDDPSLDSTISWSKSSKSFIIWNPKElFTKKILKRFFC-CNLSQFITELDTYGFVRIEGSDEQ-------LEFGHKQfFVRGKP 87
                         77789*************************9655389999999885.799*******************99.......*******66***** PP

                         XXXXXXXX CS
         HSF_DNA-bind 92 ellekikr 99
                         ell+k++ 
  GSBRNA2T00131447001 88 ELLKKMRL 95
                         ****9875 PP
2HSF_DNA-bind582.7e-181432362101
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHH.HHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX.XXXX CS
         HSF_DNA-bind   2 Flkklyeiledeelkeliswsengnsfvvldeeefa.kkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks.Fkkg 89 
                          F + +y++++d++l+++iswse+++sfv++d++e+  kk+L ++F  ++++ F++ L+  gF ++k ++++        eF h++ F +g
  GSBRNA2T00131447001 143 FYTGTYKVVDDPSLDSIISWSESNKSFVIWDPKELVeKKILRRFF-RNKLSHFIKDLKSHGFVRIKGSDEH-------LEFGHEQyFVRG 224
                          8899***************************99986155666666.5789*******************98.......******989*** PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  90 kkellekikrkk 101
                          k el+ k++rk 
  GSBRNA2T00131447001 225 KPELMIKLRRKV 236
                          ********9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.9E-22196IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.86E-19294IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.5E-19391IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.0E-17494IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.97E-18139235IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.7E-26139235IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.3E-20140230IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.7E-5143166IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.4E-17143235IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-5194206IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MLQFHVAIYE IVDDPSLDST ISWSKSSKSF IIWNPKELFT KKILKRFFCC NLSQFITELD  60
TYGFVRIEGS DEQLEFGHKQ FFVRGKPELL KKMRLQAAMN RMKKSAKKAK ARAEAEKNGE  120
PRIIINADEV RMRAMAWMSL SQFYTGTYKV VDDPSLDSII SWSESNKSFV IWDPKELVEK  180
KILRRFFRNK LSHFIKDLKS HGFVRIKGSD EHLEFGHEQY FVRGKPELMI KLRRKVAWGR  240
VKKDLKAAKA RAKAEAEKKG SVGDQPSYRK MCLEDVRIRF DQIMGHSTKA KTPLENSFRH  300
LQI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.55531e-151flower| microspore| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00131447001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013653200.11e-106heat stress transcription factor A-4a-like
TrEMBLA0A3P5Z3I70.0A0A3P5Z3I7_BRACM; Uncharacterized protein
TrEMBLM4DA990.0M4DA99_BRARP; Uncharacterized protein
STRINGBra013409.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50671450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G19630.11e-22HSF family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]