PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00131294001
Common NameGSBRNA2T00131294001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARR-B
Protein Properties Length: 505aa    MW: 56332.6 Da    PI: 6.6071
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00131294001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like79.83.2e-25277331256
              G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ.kYRla 56 
                          ++++Wt+eLH++Fv+av+qL G ++A+P++ilelmkv+gLt+++v+SHLQ k+R++
  GSBRNA2T00131294001 277 KKVDWTQELHKKFVQAVDQL-GVDQAIPSRILELMKVDGLTRHNVASHLQqKFRMH 331
                          689*****************.****************************6489986 PP
2Response_reg311.3e-113512815109
                          HHHHHHTTCEEEEEESSHHHHHHHH.HHHH.ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS- CS
         Response_reg  15 rqalekegyeevaeaddgeealell.kekd.pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpf 102
                          r+ le+ +y +v++++dg+eal  + k ++ +++ ++ ++ ++ +  e +k +++++++lp i+++     +++ +++ +Ga +fl Kp 
  GSBRNA2T00131294001  35 RSKLESMDY-IVTTFTDGTEALSAVfKSLEsFHIAIVEVNTSDEN--ESFKFLEAAKDHLPTIMISNDHCITTTMKCIALGAVEFLQKPL 121
                          5668999**.************999644446*****999988865..778888888899*******9999******************** PP

                          -HHHHHH CS
         Response_reg 103 dpeelvk 109
                          +pe+l +
  GSBRNA2T00131294001 122 SPEKLKN 128
                          ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.15E-1317135IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23007.3E-1517141No hitNo description
PROSITE profilePS5011021.52520134IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.1E-734128IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.37E-838133No hitNo description
PROSITE profilePS5129415.978273332IPR017930Myb domain
SuperFamilySSF466891.04E-15274331IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-23275333IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-22277331IPR006447Myb domain, plants
PfamPF002491.4E-6279326IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MVFTSNDISK WENFPKGLRV LLLDCGDGIS AAETRSKLES MDYIVTTFTD GTEALSAVFK  60
SLESFHIAIV EVNTSDENES FKFLEAAKDH LPTIMISNDH CITTTMKCIA LGAVEFLQKP  120
LSPEKLKNIW QHVVHKAFND GGTDVSESLK PVKESVVSML HLDTDMTIDE KDSAPLTPQL  180
KQVSRLLDGG DRQENINSST EKENMEDQDI GESKSVDTTN HDDNVIVKEE KLDGETGDTK  240
SEKTDSVKFQ KKEDETTKHN NKSTGIKNLS GNKPSRKKVD WTQELHKKFV QAVDQLGVDQ  300
AIPSRILELM KVDGLTRHNV ASHLQQKFRM HRRNILPKED HNHRWIQSRE NHRQIQRQYN  360
GFQQQHRPVM AYPVWGLPGV HPPGAVPPLW PPPLQSSGQL PPWHWRPPYP TVNVNAWGCP  420
IVPPVTGPFS SPTVTGTFST PPATQLDEEM VDQVVKEAIS KPWLPLPLGL KPPSAESVLA  480
ELSRQGISAV PSSSSSINGS RRLR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-15278330758ARR10-B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.179200.0leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00131294001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009131253.10.0PREDICTED: two-component response regulator-like APRR2
RefseqXP_009131264.10.0PREDICTED: two-component response regulator-like APRR2
SwissprotQ6LA430.0APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A3P5Z6G50.0A0A3P5Z6G5_BRACM; Uncharacterized protein
STRINGBra013277.1-P0.0(Brassica rapa)
STRINGBra013278.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57462747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.60.0ARR-B family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]