PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00131260001 | ||||||||
Common Name | GSBRNA2T00131260001, LOC106415419 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HSF | ||||||||
Protein Properties | Length: 431aa MW: 47854.5 Da PI: 4.8387 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 115.8 | 2.8e-36 | 39 | 131 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 Fl+k+y+++ed++ + ++sws +nsfvv+d+ ef++++Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k GSBRNA2T00131260001 39 FLSKTYDMVEDPASDAIVSWSPANNSFVVWDPPEFSRSLLPRYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQK 119 9********************999*****************************************999.........************* PP XXXXXXXXXXXX CS HSF_DNA-bind 92 ellekikrkkse 103 +ll++i r+ks+ GSBRNA2T00131260001 120 HLLKTISRRKST 131 *********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.5E-39 | 35 | 123 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.6E-62 | 35 | 128 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.77E-35 | 36 | 128 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 5.3E-20 | 39 | 62 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 2.2E-32 | 39 | 128 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.3E-20 | 77 | 89 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 78 | 102 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.3E-20 | 90 | 102 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 431 aa Download sequence Send to blast |
MMDGVTGGDS KSGEATTAPP LRNPHPATLL GANALPPPFL SKTYDMVEDP ASDAIVSWSP 60 ANNSFVVWDP PEFSRSLLPR YFKHNNFSSF VRQLNTYGFR KVDPDRWEFA NEGFLRGQKH 120 LLKTISRRKS THGHGTSSSN TQSHQGHMAS LSSCVEVGKF GLEEEVEQLK RDKNVLMQEL 180 VKLRQQQQST DSKLQTMVKS LQTMEQRQQQ IMSFLAKAVQ NPTFLSQFIQ KQTDSNNMHV 240 TEASKKRRLT EDGTTAASDG QIVKYQPIRS DSMMWNMMNT DEKFPFSPNR DSGVTFQEVL 300 LPTTSGQSQA YAPIPSASTS LMPMIPPMPQ ESISDSPTEN YMNAEKDVSE AFISPSPFLD 360 GGSVPNQLEG LPQDLDIDEL MSNCDIFEEY LAQSPVFGDE TTLESSDANG GHVDKLIEEL 420 GHLTSETKQL * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 1e-27 | 37 | 131 | 18 | 123 | Heat shock factor protein 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.22939 | 1e-154 | seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Constitutively expressed. {ECO:0000269|PubMed:7948881}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00131260001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:7948881}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC183492 | 0.0 | AC183492.1 Brassica oleracea Contig G, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013711617.1 | 0.0 | heat stress transcription factor A-1a | ||||
Swissprot | P41151 | 0.0 | HFA1A_ARATH; Heat stress transcription factor A-1a | ||||
TrEMBL | A0A3P5ZJA6 | 0.0 | A0A3P5ZJA6_BRACM; Uncharacterized protein | ||||
TrEMBL | M4FGF1 | 0.0 | M4FGF1_BRARP; Uncharacterized protein | ||||
STRING | Bra040179.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15101 | 16 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17750.1 | 0.0 | heat shock factor 1 |
Link Out ? help Back to Top | |
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Entrez Gene | 106415419 |
Publications ? help Back to Top | |||
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