PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00130726001
Common NameGSBRNA2T00130726001, LOC106365201
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 251aa    MW: 28899.2 Da    PI: 10.2417
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00130726001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.9e-161964147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         rg W + Ed+ l ++v+q+G+++W+ Ia+++  gR++k+c++rw++ 
  GSBRNA2T00130726001 19 RGHWRPIEDDHLRQLVEQYGPKNWNFIAQHLC-GRSGKSCRLRWYNQ 64
                         899*****************************.************96 PP
2Myb_DNA-binding551.9e-1771114146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          ++++T+eE+e+l++a++  G++ W++Iar ++ gRt++ +k++++ 
  GSBRNA2T00130726001  71 KKPFTEEEEERLLKAHRIQGNR-WASIARLFP-GRTDNAVKNHFHV 114
                          689*******************.*********.**********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.1141465IPR017930Myb domain
SuperFamilySSF466891.65E-2818112IPR009057Homeodomain-like
SMARTSM007172.1E-141867IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-252072IPR009057Homeodomain-like
CDDcd001674.53E-132263No hitNo description
PfamPF139211.9E-162282No hitNo description
PROSITE profilePS5129423.19866120IPR017930Myb domain
SMARTSM007171.5E-1470118IPR001005SANT/Myb domain
CDDcd001675.91E-1173113No hitNo description
Gene3DG3DSA:1.10.10.604.2E-2073118IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MDMSRGSNSF DYKKISCQRG HWRPIEDDHL RQLVEQYGPK NWNFIAQHLC GRSGKSCRLR  60
WYNQLDPNIT KKPFTEEEEE RLLKAHRIQG NRWASIARLF PGRTDNAVKN HFHVIMARRK  120
RESLSSTSTS TFNQSWHNML SPSPSLTRLN RSQFGLWRYQ KDKSHGTSPY TFVSTPRDDQ  180
FGSSSISNVR KEVYPERRKL KELVDEHNNA FHTATPDQNK NSVEDGPSTG DDGGKRNVAF  240
IDFLGVGLVS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-33191197107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00130726001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896370.0AC189637.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS004O21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013591863.10.0PREDICTED: transcriptional activator Myb
RefseqXP_013660105.10.0transcription factor MYB105
TrEMBLA0A0D3A2880.0A0A0D3A288_BRAOL; Uncharacterized protein
STRINGBo1g008140.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101332036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33450.11e-154myb domain protein 69
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]