PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00130641001

Common Name

GSBRNA2T00130641001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

GATA

Protein Properties

Length: 281aa MW: 31348.8 Da PI: 4.6475

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00130641001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	55.6	7.3e-18	169	203	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C t kTp+WR gp g+ktLCnaCG++y++ +l GSBRNA2T00130641001 169 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 203 99*****************************9885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50114	11.332	163	199	IPR000679	Zinc finger, GATA-type
SMART	SM00401	6.6E-17	163	213	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	1.62E-15	166	227	No hit	No description
Gene3D	G3DSA:3.30.50.10	2.0E-14	167	201	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	2.26E-15	168	215	No hit	No description
PROSITE pattern	PS00344	0	169	194	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	9.4E-16	169	203	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MEQQKLTPEL FLVAGNSSFV VDDLLDFSND NGQPDDGFET YPDSSTVSPG TLADSSNSSS 60 SLYTDGSVFS DDLCVPSEDL AELEWLSNLV EESFSKEDQD KLQLLSGLQK PQTTRLTQTK 120 QEPEPEPELD QIFIPTDTDD SNVSVPAKAR SKRPRSAAST WASLGERRCL HCATDKTPQW 180 RTGPMGPKTL CNACGVRYKS GRLVPEYRPA SSPTFVMTRH SNSHRKVMEL RRQKEMRDEH 240 LLSQLRCENL VMDIRSNGDD FLIGDNNSNH VASDFIRRLI *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00130641001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189565	1e-118	AC189565.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH009C15, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013669739.1	0.0	GATA transcription factor 9-like
Swissprot	O82632	1e-142	GATA9_ARATH; GATA transcription factor 9
TrEMBL	A0A0D3A2F2	0.0	A0A0D3A2F2_BRAOL; GATA transcription factor
STRING	Bo1g008780.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5682	27	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32890.1	1e-125	GATA transcription factor 9

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]