PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00130635001 | ||||||||
Common Name | GSBRNA2T00130635001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | GATA | ||||||||
Protein Properties | Length: 282aa MW: 31619 Da PI: 4.6475 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 55.6 | 7.3e-18 | 170 | 204 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C t kTp+WR gp g+ktLCnaCG++y++ +l GSBRNA2T00130635001 170 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 204 99*****************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.4E-17 | 164 | 214 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.543 | 164 | 200 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.19E-15 | 166 | 228 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.0E-14 | 168 | 202 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.29E-15 | 169 | 216 | No hit | No description |
Pfam | PF00320 | 9.5E-16 | 170 | 204 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 170 | 195 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MEQQQQLTPE LFLVAGNSDS FVVDDLLDFS NDNGQPDDGL EPFPDSSTVS TGILADSSNS 60 SSSLYTDGSV FSDDLCVPSE DLAELEWLSN LVEESFSKED QDKLQLLSGL QKPQTTRLTQ 120 TKQEPEPEPE LDQIFIPTDT DDSNVSVPAK ARSKRPRSAA STWASRERRC LHCATDKTPQ 180 WRTGPMGPKT LCNACGVRYK SGRLVPEYRP ASSPTFVMTR HSNSHRKVME LRRQKEMRDE 240 HLLSQLRCEN LVMDIRSNGD DFLISNSNYN NHVASDFRRL I* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00130635001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189565 | 1e-126 | AC189565.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH009C15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013669739.1 | 0.0 | GATA transcription factor 9-like | ||||
Swissprot | O82632 | 1e-145 | GATA9_ARATH; GATA transcription factor 9 | ||||
TrEMBL | A0A3P6ESV2 | 0.0 | A0A3P6ESV2_BRAOL; Uncharacterized protein (Fragment) | ||||
STRING | Bo1g008730.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5682 | 27 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32890.1 | 1e-128 | GATA transcription factor 9 |
Publications ? help Back to Top | |||
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