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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00130617001 | ||||||||
Common Name | GSBRNA2T00130617001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 191aa MW: 21054.5 Da PI: 4.6916 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.5 | 6.7e-18 | 20 | 70 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr ++ +g+Wv+eIr+p++ + r++lg+f tae+A +a++ a+++++g GSBRNA2T00130617001 20 PVYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFQTAEMAMRAHDVAALSIKG 70 68*****998.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.1E-11 | 20 | 70 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.471 | 21 | 78 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-31 | 21 | 79 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.9E-35 | 21 | 84 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.77E-21 | 21 | 78 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.9E-10 | 22 | 33 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.33E-31 | 22 | 80 | No hit | No description |
PRINTS | PR00367 | 2.9E-10 | 44 | 60 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MVDSSSLGSD KEKKGGSKQP VYRGVRMRSW GKWVSEIREP RKKSRIWLGT FQTAEMAMRA 60 HDVAALSIKG SSAILNFPEL SDSLPRPVSL SPRDVRAAAT KAALMDFGTK QVRSESESSE 120 TASVSDDLEK IVELPSLGTS LDESNEFAFY DTLEDLVFMP SWLRGGPGDD FTYNNNDSPL 180 NSVFDESFSW * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-19 | 16 | 79 | 9 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00130617001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189565 | 1e-99 | AC189565.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH009C15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013638604.1 | 1e-128 | PREDICTED: ethylene-responsive transcription factor ERF043-like isoform X2 | ||||
Swissprot | Q9M080 | 4e-91 | ERF43_ARATH; Ethylene-responsive transcription factor ERF043 | ||||
TrEMBL | A0A0D3A2H4 | 1e-125 | A0A0D3A2H4_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g009990.1 | 1e-126 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM185 | 28 | 283 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32800.1 | 3e-88 | ERF family protein |
Publications ? help Back to Top | |||
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